{"id":"https://openalex.org/W2295538862","doi":"https://doi.org/10.3233/978-1-61499-098-7-654","title":"Hierarchical and Overlapping Co-Clustering of mRNA:miRNA Interactions","display_name":"Hierarchical and Overlapping Co-Clustering of mRNA:miRNA Interactions","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2295538862","doi":"https://doi.org/10.3233/978-1-61499-098-7-654","mag":"2295538862"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-098-7-654","is_oa":true,"landing_page_url":"https://doi.org/10.3233/978-1-61499-098-7-654","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/978-1-61499-098-7-654","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059781945","display_name":"Gianvito Pio","orcid":"https://orcid.org/0000-0003-2520-3616"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pio Gianvito","raw_affiliation_strings":["University of Bari-Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bari-Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073750332","display_name":"Michelangelo Ceci","orcid":"https://orcid.org/0000-0002-6690-7583"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ceci Michelangelo","raw_affiliation_strings":["University of Bari-Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bari-Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073046271","display_name":"Corrado Appice Annalisa Malerba Donato Loglisci","orcid":"https://orcid.org/0000-0001-5790-8368"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Loglisci Corrado","raw_affiliation_strings":["University of Bari-Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bari-Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009519494","display_name":"Domenica D\u2019Elia","orcid":"https://orcid.org/0000-0003-3787-3836"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D'Elia Domenica","raw_affiliation_strings":["Institute for Biomedical Technologies (Consiglio Nazionale delle Ricerche), Italy#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technologies (Consiglio Nazionale delle Ricerche), Italy#TAB#","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035789137","display_name":"Donato Malerba","orcid":"https://orcid.org/0000-0001-8432-4608"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Malerba Donato","raw_affiliation_strings":["University of Bari-Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bari-Italy","institution_ids":["https://openalex.org/I5561750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.2089,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.89579145,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7074666619300842},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.6079827547073364},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5533921718597412},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.49603280425071716},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40266963839530945},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38706886768341064},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2878188490867615},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1797126829624176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11275425553321838},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06232300400733948}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7074666619300842},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.6079827547073364},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5533921718597412},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.49603280425071716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40266963839530945},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38706886768341064},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2878188490867615},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1797126829624176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11275425553321838},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06232300400733948}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/978-1-61499-098-7-654","is_oa":true,"landing_page_url":"https://doi.org/10.3233/978-1-61499-098-7-654","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.722.7244","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.722.7244","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.di.uniba.it/%7Ececi/Papers/Pubblicazioni/International%20Collections/IC.61__ecai%202012.pdf","raw_type":"text"},{"id":"pmh:oai:ricerca.uniba.it:11586/136729","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/136729","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.3233/978-1-61499-098-7-654","is_oa":true,"landing_page_url":"https://doi.org/10.3233/978-1-61499-098-7-654","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1493217831","https://openalex.org/W1512098439","https://openalex.org/W1573729857","https://openalex.org/W1943383135","https://openalex.org/W1965306643","https://openalex.org/W1987935765","https://openalex.org/W1999389272","https://openalex.org/W2000764777","https://openalex.org/W2017426710","https://openalex.org/W2019564823","https://openalex.org/W2020833650","https://openalex.org/W2036068296","https://openalex.org/W2047221353","https://openalex.org/W2058849889","https://openalex.org/W2069009920","https://openalex.org/W2070232376","https://openalex.org/W2105883975","https://openalex.org/W2133576408","https://openalex.org/W2143610178","https://openalex.org/W2154793065","https://openalex.org/W2158217645","https://openalex.org/W2158381555","https://openalex.org/W2159482845","https://openalex.org/W2159839388","https://openalex.org/W2163652992","https://openalex.org/W2166240615","https://openalex.org/W2166661751","https://openalex.org/W3103971085","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W4392896533","https://openalex.org/W2062945643","https://openalex.org/W2050308539","https://openalex.org/W3151405604","https://openalex.org/W4241694095","https://openalex.org/W2330252996","https://openalex.org/W2793648706","https://openalex.org/W3043187607","https://openalex.org/W3200375535"],"abstract_inverted_index":{"microRNAs":[0],"(miRNAs)":[1],"are":[2,25,121],"an":[3],"important":[4],"class":[5],"of":[6,26,33,38,54,56,75,127,134,148],"regulatory":[7,102],"factors":[8],"controlling":[9],"gene":[10],"expressions":[11],"at":[12,90],"post-transcriptional":[13],"level.":[14],"Studies":[15],"on":[16,137,140],"interactions":[17],"between":[18],"different":[19,101],"miRNAs":[20,34,57,96],"and":[21,58,79,95,139],"their":[22],"target":[23],"genes":[24],"utmost":[27],"importance":[28],"to":[29,44],"understand":[30],"the":[31,36,52,88,132,146,149],"role":[32],"in":[35,100,131],"control":[37],"biological":[39],"processes.":[40],"This":[41],"paper":[42],"contributes":[43],"these":[45],"studies":[46],"by":[47],"proposing":[48],"a":[49,73],"method":[50],"for":[51,87],"extraction":[53],"co-clusters":[55,116,128],"messenger":[59],"RNAs":[60],"(mRNAs).":[61],"Different":[62],"from":[63],"several":[64],"already":[65],"available":[66],"co-clustering":[67],"algorithms,":[68],"our":[69],"approach":[70],"efficiently":[71],"extracts":[72],"set":[74],"possibly":[76],"overlapping,":[77],"exhaustive":[78,115],"hierarchically":[80],"organized":[81],"co-clusters.":[82],"The":[83],"algorithm":[84],"is":[85],"well-suited":[86],"task":[89],"hand":[91],"since:":[92],"i)":[93],"mRNAs":[94],"can":[97],"be":[98,109],"involved":[99],"networks":[103],"that":[104,118],"may":[105,107],"or":[106],"not":[108,122],"co-active":[110],"under":[111],"some":[112],"conditions,":[113],"ii)":[114],"guarantee":[117],"possible":[119],"co-regulations":[120],"lost,":[123],"iii)":[124],"hierarchical":[125],"browsing":[126],"facilitates":[129],"biologists":[130],"interpretation":[133],"results.":[135],"Results":[136],"synthetic":[138],"real":[141],"human":[142],"miRNA:mRNA":[143],"data":[144],"show":[145],"effectiveness":[147],"approach.":[150]},"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
