{"id":"https://openalex.org/W9221848","doi":"https://doi.org/10.3233/978-1-61499-054-3-205","title":"iBRAIN2: Automated analysis and data handling for RNAi screens","display_name":"iBRAIN2: Automated analysis and data handling for RNAi screens","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W9221848","doi":"https://doi.org/10.3233/978-1-61499-054-3-205","mag":"9221848","pmid":"https://pubmed.ncbi.nlm.nih.gov/22942012"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-054-3-205","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-205","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.zora.uzh.ch/id/eprint/78964/1/iBRAIN2_HealthGrid_2012_Resubmitted_final.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045650204","display_name":"Vincent Rouilly","orcid":"https://orcid.org/0000-0003-3704-9310"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Rouilly Vincent","raw_affiliation_strings":["University of Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"University of Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044214914","display_name":"Eva Pujadas","orcid":null},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pujadas Eva","raw_affiliation_strings":["Biozentrum, Universit\u00e4t Basel, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hull&aacute;r B&eacute;la","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hull&aacute;r B&eacute;la","raw_affiliation_strings":["Institute of Molecular Systems Biology, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Systems Biology, Zurich, Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075009432","display_name":"Csaba Bal\u00e1zs","orcid":"https://orcid.org/0000-0001-7154-1726"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bal&aacute;zs Csaba","raw_affiliation_strings":["ETH Z\u00fcrich, Zurich ZH, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Zurich ZH, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049456288","display_name":"Peter Kunszt","orcid":"https://orcid.org/0000-0003-0933-4763"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kunszt Peter","raw_affiliation_strings":["ETH Z\u00fcrich, Zurich ZH, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Zurich ZH, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056716966","display_name":"Michael Podvinec","orcid":"https://orcid.org/0000-0002-3267-2173"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Podvinec Michael","raw_affiliation_strings":["Biozentrum, Universit\u00e4t Basel, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045650204"],"corresponding_institution_ids":["https://openalex.org/I1850255"],"apc_list":null,"apc_paid":null,"fwci":1.3385,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.83770651,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"175","issue":null,"first_page":"205","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.7783307433128357},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6454115509986877},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.623909592628479},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.5491887331008911},{"id":"https://openalex.org/keywords/interference","display_name":"Interference (communication)","score":0.41150274872779846},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2783288061618805},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.134842187166214},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.08026289939880371},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.051586925983428955}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.7783307433128357},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6454115509986877},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.623909592628479},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.5491887331008911},{"id":"https://openalex.org/C32022120","wikidata":"https://www.wikidata.org/wiki/Q797225","display_name":"Interference (communication)","level":3,"score":0.41150274872779846},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2783288061618805},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.134842187166214},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.08026289939880371},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.051586925983428955},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034622","descriptor_name":"RNA Interference","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.3233/978-1-61499-054-3-205","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-205","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:22942012","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22942012","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:78964","is_oa":true,"landing_page_url":null,"pdf_url":"https://www.zora.uzh.ch/id/eprint/78964/1/iBRAIN2_HealthGrid_2012_Resubmitted_final.pdf","source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rouilly, Vincent; Pujadas, Eva; Hull\u00e1r, B\u00e9la; Bal\u00e1zs, Csabas; Kunszt, Peter; Podvinec, Michael  (2012). iBRAIN2: Automated analysis and data handling for RNAi screens. In: Gesing, Sandra; Glatard, Tristan; Olabarriaga, Silvia Delgado; Solomonides, Tony; Silverstein, Jonathan C; Montagnat, Johan; Gaignard, Alban; Krefting, Dagmar. HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. Amsterdam: I O S Press, 205-213.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.5167/uzh-78964","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-78964","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"chapter"}],"best_oa_location":{"id":"pmh:oai:www.zora.uzh.ch:78964","is_oa":true,"landing_page_url":null,"pdf_url":"https://www.zora.uzh.ch/id/eprint/78964/1/iBRAIN2_HealthGrid_2012_Resubmitted_final.pdf","source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rouilly, Vincent; Pujadas, Eva; Hull\u00e1r, B\u00e9la; Bal\u00e1zs, Csabas; Kunszt, Peter; Podvinec, Michael  (2012). iBRAIN2: Automated analysis and data handling for RNAi screens. In: Gesing, Sandra; Glatard, Tristan; Olabarriaga, Silvia Delgado; Solomonides, Tony; Silverstein, Jonathan C; Montagnat, Johan; Gaignard, Alban; Krefting, Dagmar. HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. Amsterdam: I O S Press, 205-213.","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6299999952316284,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G5326042306","display_name":null,"funder_award_id":"SystemsX","funder_id":"https://openalex.org/F4320327577","funder_display_name":"SystemsX.ch"},{"id":"https://openalex.org/G6626859147","display_name":null,"funder_award_id":"InfectX","funder_id":"https://openalex.org/F4320327577","funder_display_name":"SystemsX.ch"}],"funders":[{"id":"https://openalex.org/F4320310466","display_name":"Universit\u00e4t Basel","ror":"https://ror.org/02s6k3f65"},{"id":"https://openalex.org/F4320321652","display_name":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich","ror":"https://ror.org/05a28rw58"},{"id":"https://openalex.org/F4320327577","display_name":"SystemsX.ch","ror":"https://ror.org/02s09gf16"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W9221848.pdf","grobid_xml":"https://content.openalex.org/works/W9221848.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1971144779","https://openalex.org/W1974683325","https://openalex.org/W2032194870","https://openalex.org/W2055034152","https://openalex.org/W2056022845","https://openalex.org/W2057428644","https://openalex.org/W2071853918","https://openalex.org/W2073232459","https://openalex.org/W2078168041","https://openalex.org/W2099826569","https://openalex.org/W2107554012","https://openalex.org/W2122344857","https://openalex.org/W2139442812","https://openalex.org/W2153921000","https://openalex.org/W2919753411"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2387630553","https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W1572871015","https://openalex.org/W352609212","https://openalex.org/W4404692318","https://openalex.org/W4200340037"],"abstract_inverted_index":{"We":[0,23],"report":[1],"on":[2],"the":[3,11,25,32,37],"implementation":[4],"of":[5,15,62],"a":[6],"software":[7],"suite":[8],"dedicated":[9],"to":[10,59],"management":[12],"and":[13,36],"analysis":[14],"large":[16],"scale":[17],"RNAi":[18,63],"High":[19],"Content":[20],"Screening":[21],"(HCS).":[22],"describe":[24],"requirements":[26],"identified":[27],"amongst":[28],"our":[29],"different":[30,47],"users,":[31],"supported":[33],"data":[34],"flow,":[35],"implemented":[38],"software.":[39],"Our":[40],"system":[41,55],"is":[42],"already":[43,57],"supporting":[44],"productively":[45],"three":[46],"laboratories":[48],"operating":[49],"in":[50],"distinct":[51],"IT":[52],"infrastructures.":[53],"The":[54],"was":[56],"used":[58],"analyze":[60],"hundreds":[61],"HCS":[64],"plates.":[65]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
