{"id":"https://openalex.org/W2318247711","doi":"https://doi.org/10.3233/978-1-61499-054-3-195","title":"Integrated Support for Neuroscience Research: from Study Design to Publication","display_name":"Integrated Support for Neuroscience Research: from Study Design to Publication","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2318247711","doi":"https://doi.org/10.3233/978-1-61499-054-3-195","mag":"2318247711","pmid":"https://pubmed.ncbi.nlm.nih.gov/22942011"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-054-3-195","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-195","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022594025","display_name":"Shayan Shahand","orcid":"https://orcid.org/0000-0003-0182-9104"},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Shahand Shayan","raw_affiliation_strings":["Dept. of Clinical Epidemiology Biostatistics and Bioinformatics, University of Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Clinical Epidemiology Biostatistics and Bioinformatics, University of Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I2801582894","https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068172953","display_name":"Matthan W.A. Caan","orcid":"https://orcid.org/0000-0002-5162-8880"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Caan Matthan W.A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073421485","display_name":"Antoine H. C. van Kampen","orcid":"https://orcid.org/0000-0003-1025-7232"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"van Kampen Antoine H.C.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Olabarriaga S&iacute;lvia D.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olabarriaga S&iacute;lvia D.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.3528,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.92046557,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"175","issue":null,"first_page":"195","last_page":"204"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.942300021648407,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-neuroscience","display_name":"Computational neuroscience","score":0.7556959390640259},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7020941972732544},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5860629677772522},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5760180354118347},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5707741379737854},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.4842776656150818},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.45445704460144043},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.4435625374317169},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3828388452529907},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.33168160915374756},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22369423508644104},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.14734745025634766},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09933990240097046},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.07115063071250916}],"concepts":[{"id":"https://openalex.org/C15286952","wikidata":"https://www.wikidata.org/wiki/Q8037925","display_name":"Computational neuroscience","level":2,"score":0.7556959390640259},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7020941972732544},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5860629677772522},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5760180354118347},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5707741379737854},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.4842776656150818},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.45445704460144043},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.4435625374317169},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3828388452529907},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.33168160915374756},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22369423508644104},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.14734745025634766},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09933990240097046},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.07115063071250916},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D009488","descriptor_name":"Neurosciences","qualifier_ui":"Q000458","qualifier_name":"organization & administration","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014956","descriptor_name":"Writing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.3233/978-1-61499-054-3-195","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-195","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:22942011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22942011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/8c841021-833a-46e5-b8b3-490de4f1e88f","is_oa":false,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/integrated-support-for-neuroscience-research-from-study-design-to-publication(8c841021-833a-46e5-b8b3-490de4f1e88f).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Shahand, S, Caan, M W A, van Kampen, A H C & Olabarriaga, S D 2012, Integrated support for neuroscience research: from study design to publication. in S Gesing, T Glatard, J Kr\u00fcger, S Delgado Olabarriaga, T Solomonides, J C Silverstein, J Montagnat, A Gaignard & D Krefting (eds), HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences. Studies in Health Technology and Informatics, vol. 175, Amsterdam, pp. 195-204. https://doi.org/10.3233/978-1-61499-054-3-195","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/fdc8ca32-1430-460e-a9d0-e7ec0a217cd1","is_oa":false,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/fdc8ca32-1430-460e-a9d0-e7ec0a217cd1","pdf_url":null,"source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Shahand, S, Caan, M W A, van Kampen, A H C & Olabarriaga, S D 2012, 'Integrated support for neuroscience research: from study design to publication', Studies in health technology and informatics, vol. 175, pp. 195-204.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/b85e3289-748e-4ab6-8f03-40abc6ef2963","is_oa":false,"landing_page_url":"https://pure.amc.nl/en/publications/integrated-support-for-neuroscience-research-from-study-design-to-publication(b85e3289-748e-4ab6-8f03-40abc6ef2963).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Studies in health technology and informatics, 175, 195 - 204. IOS Press","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:uvapub:oai:dare.uva.nl:publications/8c841021-833a-46e5-b8b3-490de4f1e88f","is_oa":false,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/integrated-support-for-neuroscience-research-from-study-design-to-publication(8c841021-833a-46e5-b8b3-490de4f1e88f).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 195 - 204","raw_type":"info:eu-repo/semantics/conferencepaper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4390782210","https://openalex.org/W4385769909","https://openalex.org/W1991647999","https://openalex.org/W4252166826","https://openalex.org/W4392133834","https://openalex.org/W2887972576","https://openalex.org/W2162859332","https://openalex.org/W2054414398","https://openalex.org/W2506406097","https://openalex.org/W2340883203"],"abstract_inverted_index":{"Computational":[0],"neuroscience":[1,83],"is":[2],"a":[3,109],"new":[4,18],"field":[5],"of":[6,17,59,80,95,108],"research":[7],"in":[8,29],"which":[9],"neurodegenerative":[10],"diseases":[11],"are":[12,49],"studied":[13],"with":[14,25],"the":[15,63,67,78,81,86,88,93,103,114,120],"aid":[16],"imaging":[19],"techniques":[20],"and":[21,37,40,51,76,92,106,116],"computation":[22],"facilities.":[23],"Researchers":[24],"different":[26],"expertise":[27],"collaborate":[28],"these":[30,55,100],"studies.":[31],"A":[32],"study":[33],"requires":[34],"scalable":[35],"computational":[36,68,82],"storage":[38],"capacity":[39],"information":[41],"management":[42],"facilities":[43],"to":[44,53,66],"succeed.":[45],"Many":[46],"virtual":[47,110],"laboratories":[48],"proposed":[50],"developed":[52],"facilitate":[54],"studies,":[56],"however":[57],"most":[58],"them":[60],"cover":[61],"only":[62],"parts":[64],"related":[65],"data":[69],"processing.":[70],"In":[71],"this":[72],"paper":[73],"we":[74,101],"describe":[75],"analyse":[77],"phases":[79],"studies":[84],"including":[85],"actors,":[87],"tasks":[89,118],"they":[90],"perform,":[91],"characteristics":[94],"each":[96],"phase.":[97],"Based":[98],"on":[99],"identify":[102],"required":[104],"properties":[105],"functionalities":[107],"laboratory":[111],"that":[112],"supports":[113],"actors":[115],"their":[117],"throughout":[119],"complete":[121],"study.":[122]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
