{"id":"https://openalex.org/W4407854651","doi":"https://doi.org/10.3233/978-1-61499-054-3-182","title":"The Einstein Genome Gateway using WASP &amp;ndash; A High Throughput Multi-Layered Life Sciences Portal for XSEDE","display_name":"The Einstein Genome Gateway using WASP &amp;ndash; A High Throughput Multi-Layered Life Sciences Portal for XSEDE","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W4407854651","doi":"https://doi.org/10.3233/978-1-61499-054-3-182"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-054-3-182","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-182","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5116387235","display_name":"Golden Aaron","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Golden Aaron","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113605667","display_name":"Mingsu Si","orcid":"https://orcid.org/0000-0002-1250-8106"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"McLellan Andrew S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116387238","display_name":"Dubin Robert A.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dubin Robert A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jing Qiang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jing Qiang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116387239","display_name":"Oacute Broin Pilib","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"&Oacute; Broin Pilib","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Moskowitz David","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Moskowitz David","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100612735","display_name":"Zhengdong Zhang","orcid":"https://orcid.org/0000-0002-6730-9251"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhang Zhengdong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040370543","display_name":"Masako Suzuki","orcid":"https://orcid.org/0000-0003-0605-9225"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Suzuki Masako","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027133644","display_name":"Joseph Hargitai","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hargitai Joseph","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116387236","display_name":"Calder R. Brent","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Calder R. Brent","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5116387237","display_name":"Greally John M.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Greally John M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.62072995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9323999881744385,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.6400867700576782},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5995730757713318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5805020928382874},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.3662011921405792},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25574734807014465},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2157682478427887}],"concepts":[{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.6400867700576782},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5995730757713318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5805020928382874},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.3662011921405792},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25574734807014465},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2157682478427887},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/978-1-61499-054-3-182","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-182","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3123141149","https://openalex.org/W2751414885","https://openalex.org/W2369391311","https://openalex.org/W2910762661","https://openalex.org/W2373935109","https://openalex.org/W2390279801","https://openalex.org/W4391913857"],"abstract_inverted_index":{"Massively-parallel":[0],"sequencing":[1,72,75],"(MPS)":[2],"technologies":[3],"and":[4,10,21,33,46,79,96,122,137,156,180,203,222],"their":[5],"diverse":[6],"applications":[7],"in":[8,172],"genomics":[9],"epigenomics":[11],"research":[12],"have":[13],"yielded":[14],"enormous":[15],"new":[16,144],"insights":[17],"into":[18],"the":[19,24,31,36,58,71,74,80,102,152,170,185,192,200,214,230],"physiology":[20],"pathophysiology":[22],"of":[23,35,62,118,134,151,165,187,199],"human":[25],"genome.":[26],"The":[27,50,163],"biggest":[28],"hurdle":[29],"remains":[30],"magnitude":[32],"diversity":[34],"datasets":[37],"generated,":[38],"compromising":[39],"our":[40],"ability":[41],"to":[42,68,228],"manage,":[43],"organize,":[44],"process":[45],"ultimately":[47],"analyse":[48],"data.":[49],"Wiki-based":[51],"Automated":[52],"Sequence":[53],"Processor":[54],"(WASP),":[55],"developed":[56],"at":[57,113],"Albert":[59],"Einstein":[60,114,193,231],"College":[61],"Medicine":[63],"(hereafter":[64],"Einstein),":[65],"uniquely":[66],"manages":[67],"tightly":[69],"couple":[70],"platform,":[73],"assay,":[76],"sample":[77],"metadata":[78],"automated":[81],"workflows":[82],"deployed":[83],"on":[84],"a":[85,108,188],"heterogeneous":[86],"high":[87],"performance":[88],"computing":[89],"cluster":[90],"infrastructure":[91],"that":[92],"yield":[93],"sequenced,":[94],"quality-controlled":[95],"&amp;lsquo;mapped&amp;rsquo;":[97],"sequence":[98],"data,":[99],"all":[100],"within":[101],"one":[103],"operating":[104],"environment":[105],"accessible":[106],"by":[107],"web-based":[109],"GUI":[110],"interface.":[111],"WASP":[112,175,216],"processes":[115],"4&amp;ndash;6":[116],"TB":[117],"data":[119,135,153],"per":[120],"week":[121],"since":[123],"its":[124,218,223],"production":[125],"cycle":[126],"commenced":[127],"it":[128],"has":[129,138],"processed":[130],"~":[131],"1":[132],"PB":[133],"overall":[136],"revolutionized":[139],"user":[140,171],"interactivity":[141],"with":[142,226],"these":[143],"genomic":[145],"technologies,":[146],"who":[147],"remain":[148],"blissfully":[149],"unaware":[150],"storage,":[154],"management":[155],"most":[157],"importantly":[158],"processing":[159],"services":[160],"they":[161],"request.":[162],"abstraction":[164],"such":[166],"computational":[167],"complexity":[168],"for":[169,184],"effect":[173],"makes":[174],"an":[176,181],"ideal":[177],"middleware":[178,220],"solution,":[179],"appropriate":[182],"basis":[183],"development":[186],"grid-enabled":[189],"resource":[190],"&amp;ndash;":[191,196],"Genome":[194,232],"Gateway":[195],"as":[197],"part":[198],"Extreme":[201],"Science":[202],"Engineering":[204],"Discovery":[205],"Environment":[206],"(XSEDE)":[207],"program.":[208],"In":[209],"this":[210],"paper":[211],"we":[212],"discuss":[213],"existing":[215],"system,":[217],"proposed":[219],"role,":[221],"planned":[224],"interaction":[225],"XSEDE":[227],"form":[229],"Gateway.":[233]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
