{"id":"https://openalex.org/W2237656138","doi":"https://doi.org/10.3233/978-1-61499-054-3-152","title":"Application Repository and Science Gateway for Running Molecular Docking and Dynamics Simulations","display_name":"Application Repository and Science Gateway for Running Molecular Docking and Dynamics Simulations","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2237656138","doi":"https://doi.org/10.3233/978-1-61499-054-3-152","mag":"2237656138","pmid":"https://pubmed.ncbi.nlm.nih.gov/22942006"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-054-3-152","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-152","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110499839","display_name":"G\u00e1bor Tersty\u00e1nszky","orcid":null},"institutions":[{"id":"https://openalex.org/I94951947","display_name":"University of Westminster","ror":"https://ror.org/04ycpbx82","country_code":"GB","type":"education","lineage":["https://openalex.org/I94951947"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Terstyanszky Gabor","raw_affiliation_strings":["School of Electronics and Computer Science, University of Westminster, London, UK. terstyg@wmin.ac.uk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronics and Computer Science, University of Westminster, London, UK. terstyg@wmin.ac.uk","institution_ids":["https://openalex.org/I94951947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090306567","display_name":"Tam\u00e1s Kiss","orcid":"https://orcid.org/0000-0002-3241-633X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kiss Tamas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041655788","display_name":"Tamas Kukla","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kukla Tamas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069263859","display_name":"Zsolt Lichtenberger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lichtenberger Zsolt","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103065194","display_name":"Stephen Winter","orcid":"https://orcid.org/0000-0003-2336-5187"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Winter Stephen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009252193","display_name":"Pamela Greenwell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Greenwell Pamela","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025927000","display_name":"Sharron McEldowney","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"McEldowney Sharron","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5066091587","display_name":"Hans Heindl","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Heindl Hans","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.7872,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.94625323,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"175","issue":null,"first_page":"152","last_page":"61"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.90829998254776,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7264121770858765},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4957643449306488},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.46338188648223877},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.44843241572380066},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4403954744338989},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.374554306268692},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.3641895353794098},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2892148494720459},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1559457778930664},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10433146357536316}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7264121770858765},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4957643449306488},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.46338188648223877},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.44843241572380066},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4403954744338989},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.374554306268692},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3641895353794098},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2892148494720459},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1559457778930664},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10433146357536316}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-054-3-152","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-152","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:22942006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22942006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6499999761581421,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3123141149","https://openalex.org/W2751414885","https://openalex.org/W2369391311","https://openalex.org/W2910762661","https://openalex.org/W2373935109","https://openalex.org/W1606494531","https://openalex.org/W3025777772","https://openalex.org/W2144575440","https://openalex.org/W1517740925","https://openalex.org/W1869325510"],"abstract_inverted_index":{"Molecular":[0],"docking":[1],"and":[2,58,79,110,145],"dynamics":[3],"studies":[4],"are":[5,62],"of":[6,12,49,56,76,137,158,174,190],"considerable":[7,47],"importance":[8],"in":[9,24,46,68,147],"a":[10,84,94,155],"range":[11],"disciplines":[13],"including":[14],"molecular":[15,120],"biology,":[16],"drug":[17],"design,":[18],"environmental":[19],"studies,":[20],"psychology,":[21],"etc.":[22],"Using":[23],"silico":[25,69],"tools":[26,73],"to":[27,31,102,117,149],"support":[28,67],"or":[29,123],"even":[30],"substitute":[32],"wet":[33],"laboratory":[34,41],"work":[35],"could":[36],"help":[37],"better":[38],"focusing":[39],"the":[40,54,134,138,165,169,184,188,191],"experiments":[42],"resulting":[43],"not":[44],"only":[45],"saving":[48],"resources":[50,78],"but":[51],"also":[52],"increasing":[53],"number":[55,157],"molecules":[57],"scenarios":[59,122,141],"investigated.":[60],"There":[61],"several":[63],"software":[64],"packages":[65],"that":[66],"modeling.":[70],"However,":[71],"these":[72],"require":[74],"lot":[75],"compute":[77],"special":[80],"technical":[81,135],"knowledge.":[82],"As":[83],"result,":[85],"many":[86],"bio-scientists":[87,116],"cannot":[88],"use":[89],"them.":[90],"The":[91],"paper":[92],"describes":[93],"science":[95],"gateway":[96],"based":[97],"solution":[98],"which":[99],"provides":[100],"access":[101],"Distributed":[103],"Computing":[104],"Infrastructures":[105],"such":[106],"as":[107],"clouds,":[108],"desktop":[109],"service":[111],"grids.":[112],"This":[113],"environment":[114],"enables":[115],"execute":[118],"simple":[119],"modeling":[121],"build":[124],"more":[125],"complex":[126,159],"use-cases":[127],"from":[128],"existing":[129],"building":[130,152],"blocks":[131,153],"while":[132],"hiding":[133],"details":[136],"infrastructure.":[139],"Four":[140],"have":[142],"been":[143,181],"defined":[144],"deconstructed":[146],"order":[148],"identify":[150],"common":[151],"supporting":[154],"large":[156],"use-cases.":[160],"A":[161],"reference":[162],"implementation":[163],"for":[164],"first":[166],"scenario":[167],"regarding":[168],"impact":[170],"on":[171,183],"indicator":[172],"species":[173],"pharmaceuticals":[175],"released":[176],"into":[177],"water":[178],"courses":[179],"has":[180],"implemented":[182],"EDGI":[185],"infrastructure,":[186],"demonstrating":[187],"feasibility":[189],"approach.":[192]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
