{"id":"https://openalex.org/W1769171304","doi":"https://doi.org/10.3233/978-1-61499-054-3-131","title":"Opening new gateways to workflows for life scientists","display_name":"Opening new gateways to workflows for life scientists","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W1769171304","doi":"https://doi.org/10.3233/978-1-61499-054-3-131","mag":"1769171304","pmid":"https://pubmed.ncbi.nlm.nih.gov/22942004"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-054-3-131","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-131","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.manchester.ac.uk/en/publications/70e6fec7-0e30-43d2-8436-f33e01e2198a","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016410300","display_name":"Konstantinos Karasavvas","orcid":null},"institutions":[{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Karasavvas Konstantinos","raw_affiliation_strings":["Netherlands Bioinformatics Centre, Nijmegen, The Netherlands. kostas.karasavvas@nbic.nl"],"affiliations":[{"raw_affiliation_string":"Netherlands Bioinformatics Centre, Nijmegen, The Netherlands. kostas.karasavvas@nbic.nl","institution_ids":["https://openalex.org/I2801582894"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wolstencroft Katy","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072768984","display_name":"Eleni Mina","orcid":"https://orcid.org/0000-0002-8972-9206"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mina Eleni","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080560495","display_name":"Don Cruickshank","orcid":"https://orcid.org/0000-0002-0777-0855"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cruickshank Don","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074143964","display_name":"Alan Williams","orcid":"https://orcid.org/0000-0003-3156-2105"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Williams Alan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059614463","display_name":"David De Roure","orcid":"https://orcid.org/0000-0001-9074-3016"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"De Roure David","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104489352","display_name":"Carole Goble","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Goble Carole","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5021179422","display_name":"Marco Roos","orcid":"https://orcid.org/0000-0002-8691-772X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roos Marco","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016410300"],"corresponding_institution_ids":["https://openalex.org/I2801582894"],"apc_list":null,"apc_paid":null,"fwci":3.7722,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.93704417,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"175","issue":null,"first_page":"131","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9345999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8810174465179443},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6502506136894226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6403716802597046},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.529410719871521},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.47988688945770264},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.060804516077041626}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8810174465179443},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6502506136894226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6403716802597046},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.529410719871521},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47988688945770264},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.060804516077041626},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006302","descriptor_name":"Health Services Research","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.3233/978-1-61499-054-3-131","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-054-3-131","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:22942004","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22942004","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/70e6fec7-0e30-43d2-8436-f33e01e2198a","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/70e6fec7-0e30-43d2-8436-f33e01e2198a","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Karasavvas, K, Wolstencroft, K, Mina, E, Cruickshank, D, Williams, A, De Roure, D, Goble, C & Roos, M 2012, 'Opening new gateways to workflows for life scientists', Studies in Health Technology and Informatics, vol. 175, pp. 131-141. https://doi.org/10.3233/978-1-61499-054-3-131","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/70e6fec7-0e30-43d2-8436-f33e01e2198a","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:openaire/70e6fec7-0e30-43d2-8436-f33e01e2198a","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/70e6fec7-0e30-43d2-8436-f33e01e2198a","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Karasavvas, K, Wolstencroft, K, Mina, E, Cruickshank, D, Williams, A, De Roure, D, Goble, C & Roos, M 2012, 'Opening new gateways to workflows for life scientists', Studies in Health Technology and Informatics, vol. 175, pp. 131-141. https://doi.org/10.3233/978-1-61499-054-3-131","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134"],"abstract_inverted_index":{"The":[0,22],"combination":[1],"of":[2,24,35],"highly":[3],"complex":[4],"biology":[5],"problems":[6],"and":[7,26],"varying":[8],"IT":[9],"skills":[10],"among":[11],"life":[12,37],"scientists":[13],"poses":[14],"a":[15,81,86,96],"unique":[16],"challenge":[17],"in":[18,29],"designing":[19],"bioinformatics":[20,67],"programs.":[21],"set":[23],"tools":[25,71],"initiatives":[27],"described":[28],"this":[30],"work":[31],"shows":[32],"new":[33],"ways":[34],"making":[36],"science":[38],"workflows":[39,59,92],"more":[40],"accessible":[41],"to":[42,48,56,88],"the":[43],"community.":[44],"Our":[45],"aim":[46],"is":[47,74],"help":[49,51],"bioinformaticians":[50],"biologists.":[52],"We":[53],"present":[54],"how":[55],"make":[57],"Taverna":[58,73,91],"available":[60],"from":[61,72],"within":[62],"Galaxy,":[63],"both":[64],"widely":[65],"used":[66],"platforms.":[68],"Calling":[69],"Galaxy":[70],"also":[75],"discussed.":[76],"In":[77],"addition,":[78],"we":[79],"describe":[80],"web":[82,97],"application":[83],"that":[84],"allows":[85],"user":[87],"run":[89],"arbitrary":[90],"by":[93],"only":[94],"using":[95],"browser.":[98]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
