{"id":"https://openalex.org/W119851965","doi":"https://doi.org/10.3233/978-1-60750-949-3-768","title":"The BioMediator System as a Data Integration Tool to Answer Diverse Biologic Queries","display_name":"The BioMediator System as a Data Integration Tool to Answer Diverse Biologic Queries","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W119851965","doi":"https://doi.org/10.3233/978-1-60750-949-3-768","mag":"119851965","pmid":"https://pubmed.ncbi.nlm.nih.gov/15360916"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-949-3-768","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-949-3-768","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042037366","display_name":"Loren Donelson","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210138199","display_name":"University of Washington Applied Physics Laboratory","ror":"https://ror.org/03d17d270","country_code":"US","type":"facility","lineage":["https://openalex.org/I201448701","https://openalex.org/I4210138199"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donelson Loren","raw_affiliation_strings":["University of Washington, Seattle, WA 98195-7240, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA 98195-7240, USA","institution_ids":["https://openalex.org/I201448701","https://openalex.org/I4210138199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075184354","display_name":"Peter Tarczy\u2010Hornoch","orcid":"https://orcid.org/0000-0003-1047-179X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tarczy-Hornoch Peter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070483394","display_name":"Peter Mork","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mork Peter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075310163","display_name":"Cindy Dolan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dolan Cindy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105985544","display_name":"Joyce A. Mitchell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mitchell Joyce A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063407181","display_name":"Marianne Barrier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barrier M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Mei Hao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mei Hao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.2419,"has_fulltext":false,"cited_by_count":49,"citation_normalized_percentile":{"value":0.92928387,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"107","issue":"Pt 2","first_page":"768","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6713634729385376},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46880653500556946},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4628891348838806},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.437883585691452},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42600512504577637},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.30554088950157166}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6713634729385376},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46880653500556946},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4628891348838806},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.437883585691452},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42600512504577637},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.30554088950157166}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-60750-949-3-768","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-949-3-768","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:15360916","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15360916","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W58375769","https://openalex.org/W172857819","https://openalex.org/W1491781341","https://openalex.org/W1544245168","https://openalex.org/W1603224403","https://openalex.org/W1926398271","https://openalex.org/W1965708122","https://openalex.org/W1979837251","https://openalex.org/W1981671919","https://openalex.org/W2094258495","https://openalex.org/W2098571317","https://openalex.org/W2119647569","https://openalex.org/W2160948978","https://openalex.org/W2165333281","https://openalex.org/W2168846334","https://openalex.org/W2628074563"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2003932708","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2138102289","https://openalex.org/W868043274","https://openalex.org/W2126703991","https://openalex.org/W2610897791","https://openalex.org/W4366463707","https://openalex.org/W4402024459"],"abstract_inverted_index":{"We":[0,35],"present":[1],"the":[2,7,32,41,46,52,60,64,77,88],"BioMediator":[3,53],"(www.biomediator.org)":[4],"system":[5,15,54,61,89],"and":[6,26,45,66,70,80,83],"process":[8],"of":[9,43,48,86,96],"executing":[10],"queries":[11,23],"on":[12],"it.":[13],"The":[14],"was":[16],"designed":[17],"as":[18],"a":[19,94],"tool":[20],"for":[21,93],"posing":[22],"across":[24],"semantically":[25],"syntactically":[27],"heterogeneous":[28],"data":[29],"particularly":[30],"in":[31],"biological":[33],"arena.":[34],"use":[36],"examples":[37,85],"from":[38],"researchers":[39],"at":[40],"University":[42,47],"Washington,":[44],"Missouri-Columbia,":[49],"to":[50,59,62],"discuss":[51,76],"architecture,":[55],"query":[56],"execution,":[57],"modifications":[58],"support":[63],"queries,":[65],"summarize":[67],"our":[68,71],"findings":[69],"future":[72],"directions.":[73],"Finally,":[74],"we":[75],"system's":[78],"flexibility":[79],"generalized":[81],"approach":[82],"give":[84],"how":[87],"can":[90],"be":[91],"extended":[92],"variety":[95],"objectives.":[97]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
