{"id":"https://openalex.org/W2133992441","doi":"https://doi.org/10.3233/978-1-60750-949-3-444","title":"The Role of Foundational Relations in the Alignment of Biomedical Ontologies","display_name":"The Role of Foundational Relations in the Alignment of Biomedical Ontologies","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W2133992441","doi":"https://doi.org/10.3233/978-1-60750-949-3-444","mag":"2133992441","pmid":"https://pubmed.ncbi.nlm.nih.gov/15360852"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-949-3-444","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-949-3-444","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[{"id":"https://openalex.org/I40900055","display_name":"Telstra (Australia)","ror":"https://ror.org/04g047260","country_code":"AU","type":"company","lineage":["https://openalex.org/I40900055"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Smith Barry","raw_affiliation_strings":["Institute for Formal Ontology and Medical Information Service, University of Leipzig, H\u00e4rtelstrasse 16-18, 04107 Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Formal Ontology and Medical Information Service, University of Leipzig, H\u00e4rtelstrasse 16-18, 04107 Leipzig, Germany","institution_ids":["https://openalex.org/I40900055"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111480915","display_name":"Cornelius Rosse","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rosse Cornelius","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":37.7511,"has_fulltext":false,"cited_by_count":128,"citation_normalized_percentile":{"value":0.99856138,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"107","issue":"Pt 1","first_page":"444","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9120000004768372,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5995070934295654},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41782212257385254},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.33921515941619873}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5995070934295654},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41782212257385254},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.33921515941619873}],"mesh":[{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008953","descriptor_name":"Models, Anatomic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.3233/978-1-60750-949-3-444","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-949-3-444","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:15360852","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15360852","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:GenericEPrints.OAI2:147","is_oa":false,"landing_page_url":"http://sigpubs.biostr.washington.edu/archive/00000147/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:philarchive.org/rec/SMITRO-15","is_oa":false,"landing_page_url":"https://philarchive.org/rec/SMITRO-15","pdf_url":null,"source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:philpapers.org/rec/SMITRO-15","is_oa":false,"landing_page_url":"https://philpapers.org/rec/SMITRO-15","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W123579174","https://openalex.org/W1485872235","https://openalex.org/W1515947275","https://openalex.org/W1546801591","https://openalex.org/W1555643513","https://openalex.org/W1586700544","https://openalex.org/W1676677252","https://openalex.org/W1836367264","https://openalex.org/W1845814381","https://openalex.org/W1963829561","https://openalex.org/W1965298178","https://openalex.org/W2008889752","https://openalex.org/W2046702271","https://openalex.org/W2079541344","https://openalex.org/W2146871965","https://openalex.org/W2163670493","https://openalex.org/W2172172820","https://openalex.org/W2912068123","https://openalex.org/W3190439865"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0],"Foundational":[1],"Model":[2],"of":[3,11,25,39,98,111,125,133],"Anatomy":[4],"(FMA)":[5],"symbolically":[6],"represents":[7],"the":[8,12,16,19,23,37,71,76,82,96,112,131],"structural":[9],"organization":[10],"human":[13],"body":[14],"from":[15],"macromolecular":[17],"to":[18],"macroscopic":[20],"levels,":[21],"with":[22],"goal":[24],"providing":[26],"a":[27,46,62,120],"robust":[28],"and":[29,53,56,78,84,87,101,127],"consistent":[30],"scheme":[31,43],"for":[32,48,73],"classifying":[33],"anatomical":[34],"entities":[35],"on":[36],"basis":[38],"explicit":[40],"definitions.":[41],"This":[42],"also":[44],"provides":[45],"template":[47],"modeling":[49],"pathology,":[50],"physiological":[51],"function":[52],"genotype-phenotype":[54],"correlations,":[55],"it":[57],"can":[58,106,129],"thus":[59],"serve":[60],"as":[61],"reference":[63],"ontology":[64,86],"in":[65,81,95],"biomedical":[66],"informatics.":[67],"Here":[68],"we":[69,114],"articulate":[70],"need":[72],"formally":[74],"clarifying":[75],"is-a":[77],"part-of":[79],"relations":[80,100],"FMA":[83],"similar":[85],"terminology":[88],"systems.":[89],"We":[90,116],"diagnose":[91],"certain":[92],"characteristic":[93],"errors":[94,105],"treatment":[97,124],"these":[99,104],"show":[102],"how":[103,119],"be":[107],"avoided":[108],"through":[109],"adoption":[110],"formalism":[113],"describe.":[115],"then":[117],"illustrate":[118],"consistently":[121],"applied":[122],"formal":[123],"taxonomy":[126],"partonomy":[128],"support":[130],"alignment":[132],"ontologies.":[134]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
