{"id":"https://openalex.org/W4407814958","doi":"https://doi.org/10.3233/978-1-60750-939-4-62","title":"An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS$^{\\reg}$","display_name":"An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS$^{\\reg}$","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W4407814958","doi":"https://doi.org/10.3233/978-1-60750-939-4-62"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-939-4-62","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-939-4-62","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110858955","display_name":"C. N.","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Cantor M.N.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110447134","display_name":"S. N.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sarkar I.N.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050532135","display_name":"Rony Gelman","orcid":"https://orcid.org/0000-0002-9149-9518"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gelman R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013865308","display_name":"Frauke V. H\u00e4rtel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hartel F.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073807945","display_name":"Olivier Bodenreider","orcid":"https://orcid.org/0000-0003-4769-4217"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bodenreider O.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Lussier Y.A.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lussier Y.A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5110858955"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.52423081,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.9615552425384521},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6793180704116821},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6356353759765625},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.622520923614502},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4661629796028137},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4273122549057007},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37372201681137085},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.35522013902664185},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19601908326148987},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13162854313850403},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10104420781135559},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08821409940719604},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.0625186562538147},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.05122080445289612}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.9615552425384521},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6793180704116821},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6356353759765625},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.622520923614502},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4661629796028137},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4273122549057007},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37372201681137085},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.35522013902664185},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19601908326148987},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13162854313850403},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10104420781135559},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08821409940719604},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0625186562538147},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.05122080445289612},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/978-1-60750-939-4-62","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-939-4-62","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2340589664","https://openalex.org/W4281750475","https://openalex.org/W3087321790","https://openalex.org/W186091728","https://openalex.org/W2939811865","https://openalex.org/W1822792362","https://openalex.org/W1507779355","https://openalex.org/W2794019507"],"abstract_inverted_index":{"Integration":[0],"of":[1,45,60,109],"disparate":[2],"biomedical":[3,128],"terminologies":[4],"is":[5],"becoming":[6],"increasingly":[7],"important":[8],"as":[9],"links":[10],"between":[11,84,98,126],"biological":[12],"science":[13],"and":[14,32,63,72,86,100,117],"clinical":[15],"medicine":[16],"grow.":[17],"Mapping":[18],"concepts":[19],"in":[20,67],"the":[21,25,54,58,78,93,107],"Gene":[22],"OntologyTM(GO)":[23],"to":[24,69,124],"UMLS":[26,49],"may":[27],"help":[28],"further":[29],"this":[30],"integration":[31],"allow":[33],"for":[34,77,92,121],"more":[35],"efficient":[36],"information":[37],"exchange":[38],"among":[39],"researchers.":[40],"Using":[41],"a":[42,119],"gold":[43],"standard":[44],"GO":[46],"term":[47],"—":[48],"concept":[50],"mappings":[51],"provided":[52],"by":[53],"NCI,":[55],"we":[56],"examined":[57],"performance":[59],"various":[61],"published":[62,80],"combined":[64],"mapping":[65,111,125],"techniques,":[66,95],"order":[68],"maximize":[70],"precision":[71,82,96],"recall.":[73],"We":[74],"found":[75],"that":[76,113],"previously":[79],"techniques":[81,112],"varied":[83,88,97],"(0.61-0.95),":[85],"recall":[87,101],"from":[89,102],"(0.65-0.90),":[90],"whereas":[91],"hybrid":[94],"(0.66-0.97),":[99],"(0.59-0.93).":[103],"Our":[104],"study":[105],"reveals":[106],"benefits":[108],"using":[110],"incorporate":[114],"domain":[115],"knowledge,":[116],"provides":[118],"basis":[120],"future":[122],"approaches":[123],"distinct":[127],"vocabularies.":[129]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}