{"id":"https://openalex.org/W2412403016","doi":"https://doi.org/10.3233/978-1-60750-588-4-1304","title":"Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles","display_name":"Scientific discovery workflows in bioinformatics: A scenario for the coupling of molecular regulatory pathways and gene-expression profiles","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2412403016","doi":"https://doi.org/10.3233/978-1-60750-588-4-1304","mag":"2412403016","pmid":"https://pubmed.ncbi.nlm.nih.gov/20841895"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-588-4-1304","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-588-4-1304","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014724586","display_name":"Alexandros Kanterakis","orcid":"https://orcid.org/0000-0003-4276-0115"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Kanterakis Alexandros","raw_affiliation_strings":["Foundation for Research and Technology-Hellas, Institute of Computer Science, Heraklion, Crete, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foundation for Research and Technology-Hellas, Institute of Computer Science, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":null,"display_name":"otamias Giorgos","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"otamias Giorgos","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Zacharioudakis Giorgos","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zacharioudakis Giorgos","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024944038","display_name":"Lefteris Koumakis","orcid":"https://orcid.org/0000-0002-8442-4630"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Koumakis Lefteris","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012956979","display_name":"Stelios Sfakianakis","orcid":"https://orcid.org/0000-0001-8424-4157"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sfakianakis Stelios","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5087123353","display_name":"Manolis Tsiknakis","orcid":"https://orcid.org/0000-0001-8454-1450"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tsiknakis Manolis","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.20186878,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"160","issue":"Pt 2","first_page":"1304","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9232000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9232000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8083583116531372},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5881907343864441},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5227680206298828},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4949318766593933},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.49342861771583557},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4896881878376007},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41377854347229004},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.376847505569458},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30888545513153076},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1699131727218628},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09503236413002014},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06243401765823364}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8083583116531372},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5881907343864441},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5227680206298828},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4949318766593933},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.49342861771583557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4896881878376007},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41377854347229004},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.376847505569458},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30888545513153076},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1699131727218628},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09503236413002014},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06243401765823364}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-60750-588-4-1304","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-588-4-1304","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:20841895","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20841895","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"Scientific":[0],"workflow":[1],"technologies":[2],"and":[3,16,40,78],"tools":[4],"have":[5],"become":[6],"an":[7,97],"important":[8],"weapon":[9],"in":[10,57],"the":[11,14,32,47,53,58,87],"arsenal":[12],"of":[13,34,49,60],"bioinformaticians":[15],"computational":[17],"biologists.":[18],"To":[19],"support":[20],"this":[21,50,67],"view":[22],"we":[23,94],"present":[24],"a":[25,61,91],"typical":[26],"exploratory":[27],"data":[28],"analysis":[29],"scenario":[30,51,89],"involving":[31],"combination":[33],"information":[35],"from":[36],"Gene":[37],"Regulatory":[38],"Networks":[39],"gene":[41],"expression":[42],"data.":[43],"We":[44],"further":[45],"describe":[46],"implementation":[48],"using":[52,86],"Workflow":[54],"Environment":[55],"implemented":[56],"context":[59],"large":[62],"EU":[63],"funded":[64],"project.":[65],"In":[66],"process":[68],"desirable":[69],"features":[70],"that":[71],"similar":[72],"environments":[73],"should":[74],"offer":[75],"are":[76],"identified":[77],"analyzed.":[79],"The":[80],"ICT":[81],"platform":[82],"presented":[83],"is":[84],"evaluated":[85],"chosen":[88],"as":[90],"benchmark.":[92],"Finally":[93],"conclude":[95],"with":[96],"outlook":[98],"to":[99],"future":[100],"work.":[101]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
