{"id":"https://openalex.org/W2412826969","doi":"https://doi.org/10.3233/978-1-60750-588-4-1005","title":"Modeling, building and evaluating an ontology for the automatic characterization of adverse drug effects during pharmacovigilance","display_name":"Modeling, building and evaluating an ontology for the automatic characterization of adverse drug effects during pharmacovigilance","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2412826969","doi":"https://doi.org/10.3233/978-1-60750-588-4-1005","mag":"2412826969","pmid":"https://pubmed.ncbi.nlm.nih.gov/20841835"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-588-4-1005","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-588-4-1005","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103220388","display_name":"Catherine Duclos","orcid":"https://orcid.org/0000-0001-8745-378X"},"institutions":[{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Duclos Catherine","raw_affiliation_strings":["Laboratoire d'Informatique M\u00e9dicale et Bioinformatique, Universit\u00e9 Paris 13, Bobigny, France. catherine.duclos@avc.aphp.fr"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique M\u00e9dicale et Bioinformatique, Universit\u00e9 Paris 13, Bobigny, France. catherine.duclos@avc.aphp.fr","institution_ids":["https://openalex.org/I4210091279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047697321","display_name":"Lina F. Soualmia","orcid":"https://orcid.org/0000-0001-7668-2819"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Soualmia Lina F.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046770145","display_name":"Sonia Krivine","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Krivine Sonia","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076268095","display_name":"Anne Jamet","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jamet Anne","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Lillo-Lou&euml;t Agnes","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lillo-Lou&euml;t Agnes","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.1042,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.86069652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"160","issue":"Pt 2","first_page":"1005","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.002099999925121665,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.9378111362457275},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6890902519226074},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5572385787963867},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48274749517440796},{"id":"https://openalex.org/keywords/adverse-effect","display_name":"Adverse effect","score":0.41048580408096313},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.34103769063949585},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.33274370431900024},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3217267394065857},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.04794245958328247}],"concepts":[{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.9378111362457275},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6890902519226074},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5572385787963867},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48274749517440796},{"id":"https://openalex.org/C197934379","wikidata":"https://www.wikidata.org/wiki/Q2047938","display_name":"Adverse effect","level":2,"score":0.41048580408096313},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.34103769063949585},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33274370431900024},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3217267394065857},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.04794245958328247},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-60750-588-4-1005","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-588-4-1005","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:20841835","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20841835","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7900000214576721,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2125179413","https://openalex.org/W2719570687","https://openalex.org/W2894377005","https://openalex.org/W2066240751","https://openalex.org/W3120767282","https://openalex.org/W3128299827","https://openalex.org/W2898439368","https://openalex.org/W2181320814","https://openalex.org/W3105953293","https://openalex.org/W2328148312"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,91,108],"characterization":[2,94,164],"of":[3,56,87,137],"spontaneous":[4,33,80,140],"reported":[5,34,45,81,141],"cases":[6,35,82,142],"is":[7,13,19,110],"fundamental":[8],"for":[9,179],"pharmacovigilance.":[10],"This":[11,160],"task":[12],"time":[14],"consuming":[15],"and":[16,58,115,126],"its":[17],"reproducibility":[18],"low.":[20],"OBJECTIVE:":[21],"To":[22],"develop":[23],"a":[24,70,88,98,167],"system":[25,161],"founded":[26],"on":[27,78],"an":[28],"ontology":[29,55,109],"that":[30,172],"automatically":[31],"instantiates":[32],"as":[36,84,154],"\"known\"":[37],"adverse":[38,61],"drug":[39,50,71],"effects":[40,62],"(ADE)":[41],"only":[42,148],"if":[43],"the":[44,103,138,177],"ADEs":[46],"are":[47],"described":[48],"in":[49,64,176],"compendia.":[51],"METHODS:":[52],"A":[53],"simple":[54],"drugs":[57],"their":[59],"related":[60,155],"represented":[63],"description":[65],"logics":[66],"was":[67,75,95,119],"developed":[68],"from":[69],"database.":[72],"Manual":[73],"evaluation":[74],"carried":[76],"out":[77],"378":[79],"instantiated":[83,139],"\"known":[85],"ADE":[86],"chemical":[89],"class\".":[90],"initial":[92],"manual":[93],"reviewed":[96],"by":[97,112,165,174],"pharmacovigilance":[99],"expert":[100],"to":[101,123,156,171],"validate":[102],"generated":[104],"automatic":[105],"characterization.":[106],"RESULTS:":[107],"composed":[111],"57,04":[113],"concepts":[114],"5":[116],"relations.":[117],"It":[118],"successfully":[120],"validated":[121],"thanks":[122],"Pellet":[124],"reasoner":[125],"it":[127],"contains":[128],"neither":[129],"inconsistencies":[130],"nor":[131],"cycles.":[132],"In":[133],"this":[134],"validation,":[135],"86%":[136],"effectively":[143],"concerned":[144],"notorious":[145,157],"ADEs,":[146],"whereas":[147],"75%":[149],"were":[150],"initially":[151],"identified":[152],"manually":[153],"ADEs.":[158,180],"CONCLUSION:":[159],"can":[162],"assist":[163],"applying":[166],"reasoning":[168],"process":[169],"similar":[170],"used":[173],"experts":[175],"search":[178]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
