{"id":"https://openalex.org/W2162078888","doi":"https://doi.org/10.3233/978-1-60750-583-9-171","title":"Visualization, Analysis, and Design of COMBO-FISH Probes in the Grid-Based GLOBE 3D Genome Platform","display_name":"Visualization, Analysis, and Design of COMBO-FISH Probes in the Grid-Based GLOBE 3D Genome Platform","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2162078888","doi":"https://doi.org/10.3233/978-1-60750-583-9-171","mag":"2162078888","pmid":"https://pubmed.ncbi.nlm.nih.gov/20543436"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-583-9-171","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-583-9-171","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pure.eur.nl/en/publications/b36ee8e0-8592-4067-b41d-99602658e3e8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Kepper Nick","orcid":null},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Kepper Nick","raw_affiliation_strings":["Biophysical Genomics, Dept. Cell Biology & Genetics, Erasmus MC, Dr. Molewaterplein, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Genomics, Dept. Cell Biology & Genetics, Erasmus MC, Dr. Molewaterplein, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I913958620"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111376096","display_name":"Eberhard Schmitt","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schmitt Eberhard","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000712841","display_name":"Michael Lesnussa","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lesnussa Michael","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078641114","display_name":"Yanina Weiland","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weiland Yanina","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050526529","display_name":"Hubert B Eussen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eussen Hubert B.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056347519","display_name":"Frank Grosveld","orcid":"https://orcid.org/0000-0002-7051-4715"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grosveld Frank G.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091516433","display_name":"Michael Hausmann","orcid":"https://orcid.org/0000-0001-9430-1987"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hausmann Michael","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5086034708","display_name":"Tobias Knoch","orcid":"https://orcid.org/0000-0002-6289-0315"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Knoch Tobias A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.4895,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.89825046,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"159","issue":null,"first_page":"171","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9743000268936157,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/globe","display_name":"Globe","score":0.7680823802947998},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7641556262969971},{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.6895205974578857},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5674249529838562},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5370560884475708},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34620749950408936},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.283002644777298},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24685871601104736},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.22405976057052612},{"id":"https://openalex.org/keywords/fishery","display_name":"Fishery","score":0.18422946333885193},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.08664056658744812}],"concepts":[{"id":"https://openalex.org/C2775899829","wikidata":"https://www.wikidata.org/wiki/Q3109007","display_name":"Globe","level":2,"score":0.7680823802947998},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7641556262969971},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.6895205974578857},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5674249529838562},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5370560884475708},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34620749950408936},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.283002644777298},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24685871601104736},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.22405976057052612},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.18422946333885193},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.08664056658744812},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.3233/978-1-60750-583-9-171","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-583-9-171","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:20543436","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20543436","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:eur:oai:pure.eur.nl:publications/b36ee8e0-8592-4067-b41d-99602658e3e8","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/b36ee8e0-8592-4067-b41d-99602658e3e8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Studies in Health Technology and Informatics, 159, 171 - 180. IOS Press BV","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:eur:oai:repub.eur.nl:23956","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/23956","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Studies in Health Technology and Informatics, 159, 171 - 180","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:pure.eur.nl:publications/b36ee8e0-8592-4067-b41d-99602658e3e8","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:repub.eur.nl:23956","is_oa":false,"landing_page_url":"https://repub.eur.nl/pub/23956","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Studies in Health Technology and Informatics vol. 159, pp. 171-180","raw_type":"info:eu-repo/semantics/other"}],"best_oa_location":{"id":"pmh:eur:oai:pure.eur.nl:publications/b36ee8e0-8592-4067-b41d-99602658e3e8","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/b36ee8e0-8592-4067-b41d-99602658e3e8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Studies in Health Technology and Informatics, 159, 171 - 180. IOS Press BV","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6200000047683716,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321687","display_name":"Erasmus Medisch Centrum","ror":"https://ror.org/018906e22"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1578202275","https://openalex.org/W1821238190","https://openalex.org/W1996125336","https://openalex.org/W1997091797","https://openalex.org/W2032464841","https://openalex.org/W2036580275","https://openalex.org/W2047253404","https://openalex.org/W2051869287","https://openalex.org/W2073026107","https://openalex.org/W2082189946","https://openalex.org/W2092499706","https://openalex.org/W2107691764","https://openalex.org/W2116087155","https://openalex.org/W2127640118","https://openalex.org/W2155859779","https://openalex.org/W2159479483","https://openalex.org/W2165267362","https://openalex.org/W2168909179","https://openalex.org/W2297165308","https://openalex.org/W2916408032","https://openalex.org/W2918025614"],"related_works":["https://openalex.org/W1539266347","https://openalex.org/W2267913355","https://openalex.org/W2788570199","https://openalex.org/W2000787479","https://openalex.org/W4248006302","https://openalex.org/W4401848524","https://openalex.org/W1488904332","https://openalex.org/W4256453413","https://openalex.org/W3045785873","https://openalex.org/W4378605586"],"abstract_inverted_index":{"The":[0,35],"genome":[1],"architecture":[2],"in":[3,10,72,165,236],"cell":[4],"nuclei":[5],"plays":[6],"an":[7,110,156,200],"important":[8],"role":[9],"modern":[11],"microscopy":[12],"for":[13,142,150],"the":[14,114,160,183,190,203,208,219,233],"monitoring":[15],"of":[16,23,27,37,70,129,178,185,202,207,214],"medical":[17],"diagnosis":[18,268],"and":[19,25,41,47,53,120,124,148,162,171,270],"therapy":[20,271],"since":[21],"changes":[22,63],"function":[24],"dynamics":[26],"genes":[28],"are":[29],"interlinked":[30],"with":[31,154,172],"changing":[32],"geometrical":[33],"parameters.":[34],"planning":[36,269],"corresponding":[38],"diagnostic":[39],"experiments":[40],"their":[42],"imaging":[43],"is":[44,213],"a":[45,58,67,89,95,137,166,237,245,264],"complex":[46,246],"often":[48],"interactive":[49,111,144,247,266],"IT":[50],"intensive":[51],"challenge":[52],"thus":[54],"makes":[55],"high-performance":[56],"grids":[57],"necessity.":[59],"To":[60,93],"detect":[61],"genetic":[62],"we":[64,107,134,242],"recently":[65],"developed":[66],"new":[68],"form":[69],"fluorescence":[71],"situ":[73],"hybridization":[74,97,220],"(FISH)":[75],"-":[76,81],"COMBinatorial":[77],"Oligonucleotide":[78],"FISH":[79],"(COMBO-FISH)":[80],"which":[82,212],"labels":[83],"small":[84],"nucleotide":[85],"sequences":[86,188],"clustering":[87,187],"at":[88,198,227],"desired":[90],"genomic":[91],"location.":[92],"achieve":[94],"unique":[96,257],"spot":[98],"other":[99],"side":[100,186],"clusters":[101],"have":[102,108,135],"to":[103,122,181,217],"be":[104],"excluded.":[105],"Therefore,":[106],"designed":[109],"pipeline":[112],"using":[113,255],"grid-based":[115,138],"GLOBE":[116,258],"3D":[117,204,259],"Genome":[118,260],"Viewer":[119],"Platform":[121,261],"design":[123,153,192],"display":[125],"different":[126,228],"labelling":[127],"variants":[128],"candidate":[130],"probe":[131,152,191,221],"sets.":[132],"Thus,":[133],"created":[136],"virtual":[139],"\"paper\"":[140],"tool":[141],"easy":[143],"calculation,":[145],"analysis,":[146],"management,":[147],"representation":[149],"COMBO-FISH":[151],"many":[155],"advantage:":[157],"Since":[158],"all":[159],"calculations":[161],"analysis":[163],"run":[164],"grid,":[167],"one":[168],"can":[169,249],"instantly":[170],"great":[173],"visual":[174],"ease":[175],"locate":[176],"duplications":[177],"gene":[179],"subsequences":[180],"guide":[182],"elimination":[184],"during":[189],"process,":[193],"as":[194,196],"well":[195],"get":[197],"least":[199],"impression":[201],"architectural":[205],"embedding":[206],"respective":[209],"chromosome":[210],"region,":[211],"major":[215],"importance":[216],"estimate":[218],"dynamics.":[222],"Beyond,":[223],"even":[224],"several":[225],"people":[226],"locations":[229],"could":[230],"work":[231],"on":[232],"same":[234],"process":[235,248],"team":[238],"wise":[239],"manner.":[240],"Consequently,":[241],"present":[243],"how":[244],"profit":[250],"from":[251],"grid":[252],"infrastructure":[253],"technology":[254],"our":[256],"gateway":[262],"towards":[263],"real":[265],"curative":[267],"monitoring.":[272]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
