{"id":"https://openalex.org/W2294545068","doi":"https://doi.org/10.3233/978-1-60750-530-3-616","title":"Applying Parameterizable Dynamic Configurations to Sequence Alignment","display_name":"Applying Parameterizable Dynamic Configurations to Sequence Alignment","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2294545068","doi":"https://doi.org/10.3233/978-1-60750-530-3-616","mag":"2294545068"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-530-3-616","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-530-3-616","pdf_url":null,"source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://biblio.ugent.be/publication/847433/file/847509","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Davidson Tom","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Davidson Tom","raw_affiliation_strings":["Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053420008","display_name":"Karel Bruneel","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bruneel Karel","raw_affiliation_strings":["Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086832692","display_name":"Harald Devos","orcid":null},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Devos Harald","raw_affiliation_strings":["Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004502321","display_name":"Dirk Stroobandt","orcid":"https://orcid.org/0000-0002-4477-5313"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Stroobandt Dirk","raw_affiliation_strings":["Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2801227569"],"apc_list":null,"apc_paid":null,"fwci":0.5654,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70022183,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5495188236236572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45789533853530884},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40822285413742065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2596316337585449},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10894140601158142}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5495188236236572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45789533853530884},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40822285413742065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2596316337585449},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10894140601158142}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/978-1-60750-530-3-616","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-530-3-616","pdf_url":null,"source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},{"id":"pmh:oai:archive.ugent.be:847433","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-847433","pdf_url":"https://biblio.ugent.be/publication/847433/file/847509","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN: 9781607505297","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:archive.ugent.be:847433","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/847433","pdf_url":"https://biblio.ugent.be/publication/847433/file/847509","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ParCo 2009, Proceedings","raw_type":null}],"best_oa_location":{"id":"pmh:oai:archive.ugent.be:847433","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-847433","pdf_url":"https://biblio.ugent.be/publication/847433/file/847509","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN: 9781607505297","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2294545068.pdf","grobid_xml":"https://content.openalex.org/works/W2294545068.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W2015292449","https://openalex.org/W2087064593","https://openalex.org/W2128804993","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Hardware":[0],"acceleration":[1],"is":[2],"needed":[3],"to":[4,52,82],"speed":[5],"up":[6],"DNA":[7],"or":[8],"protein":[9],"alignment":[10,17],"while":[11],"keeping":[12],"the":[13,16,59,83],"accuracy":[14],"of":[15,34,58],"result":[18],"high":[19],"enough.":[20],"The":[21],"hardware":[22,67],"resources":[23],"used":[24,51],"can":[25,49,70],"be":[26,50,71],"effectively":[27],"optimized":[28],"by":[29],"using":[30],"a":[31,46,54,66,74,78],"new":[32],"way":[33],"run-time":[35,55],"reconfiguration,":[36],"called":[37],"parameterizable":[38,47],"reconfiguration.":[39],"In":[40],"this":[41],"paper,":[42],"we":[43],"show":[44],"how":[45],"configuration":[48],"create":[53],"reconfigurable":[56],"implementation":[57,63],"Smith-Waterman":[60],"algorithm.":[61],"This":[62],"results":[64],"in":[65],"design":[68],"that":[69],"implemented":[72],"on":[73],"cheaper":[75],"FPGA":[76],"with":[77],"performance":[79],"penalty":[80],"due":[81],"reconfiguration":[84],"overhead.":[85]},"counts_by_year":[],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
