{"id":"https://openalex.org/W109453981","doi":"https://doi.org/10.3233/978-1-60750-027-8-232","title":"Shared Genomics: High Performance Computing for distributed insights in genomic medical research","display_name":"Shared Genomics: High Performance Computing for distributed insights in genomic medical research","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W109453981","doi":"https://doi.org/10.3233/978-1-60750-027-8-232","mag":"109453981","pmid":"https://pubmed.ncbi.nlm.nih.gov/19593061"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-60750-027-8-232","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-027-8-232","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014404477","display_name":"David C. Hoyle","orcid":"https://orcid.org/0000-0003-3483-5885"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hoyle David C.","raw_affiliation_strings":["North West Institute for BioHealth Informatics, University of Manchester, Manchester, M13 9PL, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North West Institute for BioHealth Informatics, University of Manchester, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029762241","display_name":"Mark Delderfield","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Delderfield Mark","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037936976","display_name":"Lee Kitching","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kitching Lee","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111427350","display_name":"G. H. Smith","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Smith Gareth","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5011177296","display_name":"Iain Buchan","orcid":"https://orcid.org/0000-0003-3392-1650"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Buchan Iain","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.454,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63026361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"147","issue":null,"first_page":"232","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9301999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7544435262680054},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6912509202957153},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6581426858901978},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5820479989051819},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.578255832195282},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.45821067690849304},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3718124032020569},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34904831647872925},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3407360017299652},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.244299978017807},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1595591902732849},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13624244928359985},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.1165417730808258},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11020639538764954},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10578370094299316}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7544435262680054},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6912509202957153},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6581426858901978},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5820479989051819},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.578255832195282},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.45821067690849304},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3718124032020569},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34904831647872925},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3407360017299652},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.244299978017807},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1595591902732849},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13624244928359985},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.1165417730808258},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11020639538764954},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10578370094299316},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017598","descriptor_name":"Efficiency, Organizational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017598","descriptor_name":"Efficiency, Organizational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017598","descriptor_name":"Efficiency, Organizational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.3233/978-1-60750-027-8-232","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-60750-027-8-232","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:19593061","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19593061","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/61c69198-0c4b-41fb-a284-36a7e376430b","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/61c69198-0c4b-41fb-a284-36a7e376430b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hoyle, D C, Delderfield, M, Kitching, L, Smith, G & Buchan, I 2009, 'Shared genomics: High performance computing for distributed insights in genomic medical research', Studies in Health Technology and Informatics, vol. 147, pp. 232-241. https://doi.org/10.3233/978-1-60750-027-8-232","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/9dd786ca-f3c9-41df-a1a4-034ad0ade19f","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/9dd786ca-f3c9-41df-a1a4-034ad0ade19f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hoyle, D C, Delderfield, M, Kitching, L, Smith, G & Buchan, I 2009, Shared genomics: High performance computing for distributed insights in genomic medical research. in Studies in Health Technology and Informatics|Stud. Health Technol. Informatics. vol. 147, IOS Press, pp. 232-241, 7th Annual HealthGrid Conference: Healthgrid Research, Innovation and Business Case, HealthGrid 2009, Berlin, 1/07/09. https://doi.org/10.3233/978-1-60750-027-8-232","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2388509490","https://openalex.org/W2109648960","https://openalex.org/W2050384624","https://openalex.org/W2166015079","https://openalex.org/W2776888796","https://openalex.org/W2388480422","https://openalex.org/W2624268110","https://openalex.org/W2951120646","https://openalex.org/W2356913294","https://openalex.org/W2396746549"],"abstract_inverted_index":{"The":[0,34],"study":[1],"of":[2,5,36,57,65,74,85,149],"the":[3,23,54,62,66,83,117,136,138,147],"genetics":[4,89],"diseases":[6],"is":[7,124],"entering":[8],"a":[9,28,31,126],"new":[10],"era.":[11],"Increasingly,":[12],"genome-wide":[13],"association":[14],"studies":[15],"are":[16,99],"being":[17],"used":[18,52],"to":[19,49,116],"identify":[20],"positions":[21],"within":[22],"human":[24],"genome":[25],"that":[26,41],"have":[27,48],"link":[29],"with":[30,102],"disease":[32],"condition.":[33],"number":[35],"genomic":[37],"locations":[38],"studied":[39],"means":[40],"High":[42],"Performance":[43],"Computing":[44],"(HPC)":[45],"solutions":[46],"will":[47,69],"increasingly":[50],"be":[51],"in":[53],"statistical":[55,67,88],"analysis":[56,68,90],"these":[58],"data":[59],"sets.":[60],"Understanding":[61],"biomedical":[63],"implications":[64],"also":[70],"require":[71],"heavy":[72],"use":[73,93],"bioinformatics":[75,121,142],"annotation":[76,122,143],"tools.":[77],"In":[78],"this":[79],"paper":[80],"we":[81],"report":[82],"outcome":[84],"developing":[86],"HPC":[87,118,139],"codes":[91,119],"for":[92],"by":[94,106],"clinical":[95],"researchers.":[96],"Statistical":[97],"results":[98,152],"automatically":[100],"annotated":[101],"relevant":[103],"biological":[104],"information":[105],"calling":[107],"multiple":[108],"web-services":[109],"orchestrated":[110],"via":[111,125],"pre-existing":[112],"scientific":[113],"workflows.":[114],"Access":[115],"and":[120,141,151],"processes":[123],"client":[127],"Workbench":[128],"which":[129],"hides":[130],"as":[131,133],"much":[132],"possible":[134],"from":[135],"user":[137],"infrastructure":[140],"processes,":[144],"whilst":[145],"aiding":[146],"exchange":[148],"ideas":[150],"between":[153],"stakeholders.":[154]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
