{"id":"https://openalex.org/W207770179","doi":"https://doi.org/10.3233/978-1-58603-964-6-183","title":"Fast Interactive Integration of Cross-Sectional Image Datasets and Surface Data for Morphometric Analysis","display_name":"Fast Interactive Integration of Cross-Sectional Image Datasets and Surface Data for Morphometric Analysis","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W207770179","doi":"https://doi.org/10.3233/978-1-58603-964-6-183","mag":"207770179","pmid":"https://pubmed.ncbi.nlm.nih.gov/19377145"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-58603-964-6-183","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-58603-964-6-183","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048349604","display_name":"Oscar Meruvia-Pastor","orcid":"https://orcid.org/0000-0001-7543-5517"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Meruvia-Pastor Oscar","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Calgary, Canada. oscar.dot.meruvia@ucalgary.dot.ca"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Calgary, Canada. oscar.dot.meruvia@ucalgary.dot.ca","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Soh Jung","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Soh Jung","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Xiao Mei","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiao Mei","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Schmidt Eric","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Schmidt Eric","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Logan Cairine","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Logan Cairine","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058861157","display_name":"Julia C. Boughner","orcid":"https://orcid.org/0000-0003-1147-364X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Boughner Julia C.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028447324","display_name":"Nicholas Jones","orcid":"https://orcid.org/0000-0002-0111-2368"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jones Nicholas","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004183725","display_name":"David Osborn","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Osborn David","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023619661","display_name":"Johanna Santiago","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Santiago Johanna","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039571638","display_name":"Julian Gittleman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gittleman Julian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Hallgr&iacute;msson Benedikt","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hallgr&iacute;msson Benedikt","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5009552437","display_name":"Christoph W. Sensen","orcid":"https://orcid.org/0000-0001-9604-8962"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sensen Christoph W.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5048349604"],"corresponding_institution_ids":["https://openalex.org/I168635309"],"apc_list":null,"apc_paid":null,"fwci":0.9974,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.78104994,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"142","issue":null,"first_page":"183","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9366000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.9064000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9053000211715698,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7765714526176453},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6049172878265381},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5864985585212708},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5651548504829407},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5229138135910034},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4777737855911255},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4757375717163086},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.4509515166282654},{"id":"https://openalex.org/keywords/stack","display_name":"Stack (abstract data type)","score":0.4354979991912842},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4185318946838379},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13292309641838074}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7765714526176453},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6049172878265381},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5864985585212708},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5651548504829407},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5229138135910034},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4777737855911255},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4757375717163086},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.4509515166282654},{"id":"https://openalex.org/C9395851","wikidata":"https://www.wikidata.org/wiki/Q177929","display_name":"Stack (abstract data type)","level":2,"score":0.4354979991912842},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4185318946838379},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13292309641838074},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002971","descriptor_name":"Cleft Lip","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D002971","descriptor_name":"Cleft Lip","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D002971","descriptor_name":"Cleft Lip","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019412","descriptor_name":"Anatomy, Cross-Sectional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047108","descriptor_name":"Embryonic Development","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D047108","descriptor_name":"Embryonic Development","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D047108","descriptor_name":"Embryonic Development","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D049109","descriptor_name":"Cell Proliferation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049109","descriptor_name":"Cell Proliferation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049109","descriptor_name":"Cell Proliferation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-58603-964-6-183","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-58603-964-6-183","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:19377145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19377145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W66834283","https://openalex.org/W1536800228","https://openalex.org/W1966036381","https://openalex.org/W2009831595","https://openalex.org/W2047167129","https://openalex.org/W2155328970","https://openalex.org/W2229412420"],"related_works":["https://openalex.org/W2006240110","https://openalex.org/W2909972699","https://openalex.org/W2039602384","https://openalex.org/W2751110224","https://openalex.org/W1966357780","https://openalex.org/W2496664377","https://openalex.org/W2288407995","https://openalex.org/W2147036980","https://openalex.org/W304756206","https://openalex.org/W4312613920"],"abstract_inverted_index":{"To":[0],"investigate":[1],"external":[2],"facial":[3],"morphology":[4],"and":[5,9,27,71,74,87,101,119,140,152],"cell":[6],"proliferation":[7],"patterns":[8],"their":[10],"relationship":[11],"with":[12,46],"cleft":[13],"lip":[14],"malformation":[15],"in":[16,76,84],"mice,":[17],"we":[18],"need":[19],"to":[20,48,82,104,126,144],"compare":[21],"samples":[22,38],"of":[23,64,93,108,110,117,130,150],"mice":[24],"tissue":[25],"photographs":[26],"surface":[28],"reconstructions":[29],"from":[30,34],"micro-CT":[31],"scans":[32],"obtained":[33,39],"mouse":[35],"embryos.":[36],"Tissue":[37],"through":[40],"digital":[41],"photography":[42],"are":[43,124],"typically":[44],"misaligned":[45],"respect":[47],"each":[49],"other,":[50],"which":[51],"prevents":[52],"further":[53],"analysis.":[54],"We":[55],"have":[56],"developed":[57],"a":[58,115],"system":[59,79,135],"for":[60,68,158],"fast":[61],"interactive":[62,120],"alignment":[63],"these":[65],"image":[66],"stacks":[67],"volume":[69],"reconstruction":[70],"data":[72],"visualization":[73],"analysis":[75],"3D.":[77],"The":[78],"is":[80,136],"designed":[81],"work":[83],"multiprocessor":[85],"environments":[86],"can":[88,141],"utilize":[89],"an":[90],"arbitrary":[91],"number":[92],"processors,":[94],"cutting":[95],"down":[96],"significantly":[97,154],"the":[98,128,131,155],"turnaround":[99],"time":[100,157],"allowing":[102],"users":[103],"quickly":[105],"process":[106],"sets":[107],"hundreds":[109],"high":[111],"resolution":[112],"images":[113],"using":[114],"combination":[116],"automated":[118],"tools.":[121],"Additional":[122],"modules":[123],"used":[125],"reconstruct":[127],"shape":[129],"original":[132],"subject.":[133],"Our":[134],"interactive,":[137],"fully":[138],"scalable":[139],"be":[142],"applied":[143],"any":[145],"photographic":[146],"sliced":[147],"dataset,":[148],"regardless":[149],"subject":[151],"reduces":[153],"processing":[156],"stack":[159],"alignment.":[160]},"counts_by_year":[],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
