{"id":"https://openalex.org/W2162317335","doi":"https://doi.org/10.3217/jucs-016-05-0604","title":"Investigating a Correlation between Subcellular Localization and Fold of Proteins","display_name":"Investigating a Correlation between Subcellular Localization and Fold of Proteins","publication_year":2010,"publication_date":"2010-03-01","ids":{"openalex":"https://openalex.org/W2162317335","doi":"https://doi.org/10.3217/jucs-016-05-0604","mag":"2162317335"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7001121","is_oa":true,"landing_page_url":"https://zenodo.org/record/7001121","pdf_url":"https://zenodo.org/record/7001121","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 16((5)) 604-621","raw_type":"info:eu-repo/semantics/article"},"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7001121","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080188741","display_name":"Johannes A\u00dffalg","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A\u00dffalg, Johannes","raw_affiliation_strings":["( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","Ludwig-Maximilian University of Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig-Maximilian University of Munich","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101551965","display_name":"Jing Gong","orcid":"https://orcid.org/0000-0002-0040-5839"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gong, Jing","raw_affiliation_strings":["( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","Ludwig-Maximilian University of Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig-Maximilian University of Munich","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109848174","display_name":"Hans\u2010Peter Kriegel","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kriegel, Hans-Peter","raw_affiliation_strings":["( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","Ludwig-Maximilian University of Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig-Maximilian University of Munich","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087074483","display_name":"Alexey Pryakhin","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pryakhin, Alexey","raw_affiliation_strings":["( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","Ludwig-Maximilian University of Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig-Maximilian University of Munich","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112272430","display_name":"Tiandi Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wei, Tiandi","raw_affiliation_strings":["( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","Ludwig-Maximilian University of Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig-Maximilian University of Munich","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047196019","display_name":"Arthur Zimek","orcid":"https://orcid.org/0000-0001-7713-4208"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Zimek, Arthur","raw_affiliation_strings":["( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","Ludwig-Maximilian University of Munich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"( Institute for Informatics , Ludwig-Maximilians-Universitt Mnchen , Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Ludwig-Maximilian University of Munich","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I8204097"],"apc_list":null,"apc_paid":null,"fwci":0.2685,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.60069324,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.8304120898246765},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.6271822452545166},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6099841594696045},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.5781949162483215},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5526625514030457},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.4837210476398468},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46326711773872375},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46088409423828125},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4498894214630127},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.43412110209465027},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.423079252243042},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4141235053539276},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.41306576132774353},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25047028064727783},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19756627082824707},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.18210440874099731},{"id":"https://openalex.org/keywords/cytoplasm","display_name":"Cytoplasm","score":0.1498224437236786},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1354064643383026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05768904089927673}],"concepts":[{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.8304120898246765},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.6271822452545166},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6099841594696045},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.5781949162483215},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5526625514030457},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.4837210476398468},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46326711773872375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46088409423828125},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4498894214630127},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.43412110209465027},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.423079252243042},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4141235053539276},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.41306576132774353},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25047028064727783},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19756627082824707},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.18210440874099731},{"id":"https://openalex.org/C190062978","wikidata":"https://www.wikidata.org/wiki/Q79899","display_name":"Cytoplasm","level":2,"score":0.1498224437236786},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1354064643383026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05768904089927673},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:zenodo.org:7001121","is_oa":true,"landing_page_url":"https://zenodo.org/record/7001121","pdf_url":"https://zenodo.org/record/7001121","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 16((5)) 604-621","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.603.7025","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.603.7025","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.jucs.org/jucs_16_5/investigating_a_correlation_between/jucs_16_05_0604_0621_assfalg.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7001121","is_oa":true,"landing_page_url":"https://zenodo.org/record/7001121","pdf_url":"https://zenodo.org/record/7001121","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 16((5)) 604-621","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162317335.pdf","grobid_xml":"https://content.openalex.org/works/W2162317335.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1512098439","https://openalex.org/W1523469746","https://openalex.org/W1570448133","https://openalex.org/W1583700199","https://openalex.org/W1808644423","https://openalex.org/W1965414679","https://openalex.org/W1979975413","https://openalex.org/W1992502768","https://openalex.org/W2006211612","https://openalex.org/W2011235285","https://openalex.org/W2038335468","https://openalex.org/W2042084565","https://openalex.org/W2042997873","https://openalex.org/W2045777307","https://openalex.org/W2047672715","https://openalex.org/W2055616662","https://openalex.org/W2085277871","https://openalex.org/W2094931538","https://openalex.org/W2107247090","https://openalex.org/W2108067237","https://openalex.org/W2109109045","https://openalex.org/W2112452502","https://openalex.org/W2117987251","https://openalex.org/W2125055259","https://openalex.org/W2130479394","https://openalex.org/W2136930152","https://openalex.org/W2143426320","https://openalex.org/W2146620899","https://openalex.org/W2149706766","https://openalex.org/W2151180344","https://openalex.org/W2151790371","https://openalex.org/W2154202919","https://openalex.org/W2160979370","https://openalex.org/W2161732286","https://openalex.org/W2162045311","https://openalex.org/W2170700642"],"related_works":["https://openalex.org/W2079250833","https://openalex.org/W2797478058","https://openalex.org/W1977827057","https://openalex.org/W2012686113","https://openalex.org/W2142000052","https://openalex.org/W2036154117","https://openalex.org/W2201354711","https://openalex.org/W2554908696","https://openalex.org/W2135470984","https://openalex.org/W1982289655","https://openalex.org/W2121265934","https://openalex.org/W2783944345","https://openalex.org/W2950300425","https://openalex.org/W33421173","https://openalex.org/W2021703339","https://openalex.org/W2111105050","https://openalex.org/W1514769666","https://openalex.org/W2082972649","https://openalex.org/W2096694476","https://openalex.org/W2143065269"],"abstract_inverted_index":{"Abstract:":[0],"When":[1],"considering":[2],"the":[3,29,35,42,51,95,125,133,145],"prediction":[4,158],"of":[5,34,46,53,98,114,136,148],"a":[6,10,13,17,22,47,54,91,112,142],"structural":[7,102,118,146],"class":[8,119],"for":[9,111,144],"protein":[11,55,153,156],"as":[12,141],"classification":[14,113,147],"problem,":[15],"usually":[16],"classifier":[18],"is":[19,60,68,106],"based":[20,121],"on":[21,122],"feature":[23,143],"vector":[24],"x":[25],"\u2208":[26],"Rn,":[27],"where":[28],"features":[30],"represent":[31],"certain":[32],"attributes":[33],"primary":[36],"sequence":[37],"or":[38],"derived":[39],"properties":[40],"(e.g.,":[41],"predicted":[43],"secondary":[44],"structure)":[45],"given":[48],"protein.":[49],"Since":[50],"structure":[52],"(i.e.,":[56],"its":[57],"native":[58],"conformation)":[59],"stable":[61],"only":[62],"under":[63],"specific":[64,78],"environmental":[65],"conditions,":[66],"it":[67],"commonly":[69],"accepted":[70],"to":[71,77,83,109],"assume":[72],"proteins":[73,99,115,137],"being":[74],"evolutionarily":[75],"adapted":[76],"subcellular":[79,96,126,134,154],"localizations":[80],"and":[81,100],"according":[82],"their":[84,101,117],"physicochem-ical":[85],"environment.":[86],"Our":[87],"statistical":[88],"evaluation":[89],"shows":[90],"strong":[92,107],"correlation":[93,105],"between":[94],"localization":[97,135],"class.":[103],"The":[104],"enough":[108],"allow":[110],"into":[116],"solely":[120],"information":[123],"regarding":[124,132],"localization.":[127],"We":[128],"conclude":[129],"that":[130],"knowledge":[131],"can":[138],"be":[139],"useful":[140],"proteins.":[149],"Key":[150],"Words:":[151],"bioinformatics,":[152],"localization,":[155],"fold":[157]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2016-06-24T00:00:00"}
