{"id":"https://openalex.org/W2105464342","doi":"https://doi.org/10.3217/jucs-015-04-0742","title":"Integrative Discovery of Multifaceted Sequence Patterns by Frame-Relayed Search and Hybrid PSO-ANN","display_name":"Integrative Discovery of Multifaceted Sequence Patterns by Frame-Relayed Search and Hybrid PSO-ANN","publication_year":2020,"publication_date":"2020-04-07","ids":{"openalex":"https://openalex.org/W2105464342","doi":"https://doi.org/10.3217/jucs-015-04-0742","mag":"2105464342"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7000687","is_oa":true,"landing_page_url":"https://zenodo.org/record/7000687","pdf_url":"https://zenodo.org/record/7000687","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 15((4)) 742-764","raw_type":"info:eu-repo/semantics/article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7000687","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072681295","display_name":"Chia-Ming Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I75357094","display_name":"National Yunlin University of Science and Technology","ror":"https://ror.org/04qkq2m54","country_code":"TW","type":"education","lineage":["https://openalex.org/I75357094"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Chia-Ming Wang","raw_affiliation_strings":["National Yunlin University Of Science and Technology"],"affiliations":[{"raw_affiliation_string":"National Yunlin University Of Science and Technology","institution_ids":["https://openalex.org/I75357094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109955388","display_name":"Sing-Wu Liou","orcid":null},"institutions":[{"id":"https://openalex.org/I75357094","display_name":"National Yunlin University of Science and Technology","ror":"https://ror.org/04qkq2m54","country_code":"TW","type":"education","lineage":["https://openalex.org/I75357094"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Sing-Wu Liou","raw_affiliation_strings":["National Yunlin University Of Science and Technology"],"affiliations":[{"raw_affiliation_string":"National Yunlin University Of Science and Technology","institution_ids":["https://openalex.org/I75357094"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080185510","display_name":"Yin\u2010Fu Huang","orcid":"https://orcid.org/0000-0001-6665-0135"},"institutions":[{"id":"https://openalex.org/I75357094","display_name":"National Yunlin University of Science and Technology","ror":"https://ror.org/04qkq2m54","country_code":"TW","type":"education","lineage":["https://openalex.org/I75357094"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yin-Fu Huang","raw_affiliation_strings":["National Yunlin University Of Science and Technology"],"affiliations":[{"raw_affiliation_string":"National Yunlin University Of Science and Technology","institution_ids":["https://openalex.org/I75357094"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072681295"],"corresponding_institution_ids":["https://openalex.org/I75357094"],"apc_list":null,"apc_paid":null,"fwci":5.0071,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.95616066,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9514999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6813974380493164},{"id":"https://openalex.org/keywords/frame","display_name":"Frame (networking)","score":0.649493932723999},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4767932891845703},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.430732786655426},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11808818578720093},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09225565195083618},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.04689168930053711}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6813974380493164},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.649493932723999},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4767932891845703},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.430732786655426},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11808818578720093},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09225565195083618},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.04689168930053711}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:zenodo.org:7000687","is_oa":true,"landing_page_url":"https://zenodo.org/record/7000687","pdf_url":"https://zenodo.org/record/7000687","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 15((4)) 742-764","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.323.9088","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.323.9088","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.jucs.org/jucs_15_4/integrative_discovery_of_multifaceted/jucs_15_04_0742_0764_liou.pdf","raw_type":"text"},{"id":"doi:10.3217/jucs-015-04-0742","is_oa":true,"landing_page_url":"https://doi.org/10.3217/jucs-015-04-0742","pdf_url":null,"source":{"id":"https://openalex.org/S4306400660","display_name":"TUGraz OPEN Library (Graz University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4092182","host_organization_name":"Graz University of Technology","host_organization_lineage":["https://openalex.org/I4092182"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7000687","is_oa":true,"landing_page_url":"https://zenodo.org/record/7000687","pdf_url":"https://zenodo.org/record/7000687","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 15((4)) 742-764","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105464342.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1488045365","https://openalex.org/W1498410508","https://openalex.org/W1573503290","https://openalex.org/W1967821608","https://openalex.org/W1981371363","https://openalex.org/W1983555686","https://openalex.org/W1996695434","https://openalex.org/W2002180966","https://openalex.org/W2005324344","https://openalex.org/W2009566340","https://openalex.org/W2012067705","https://openalex.org/W2039555609","https://openalex.org/W2042664747","https://openalex.org/W2065120930","https://openalex.org/W2070310544","https://openalex.org/W2073017619","https://openalex.org/W2073850887","https://openalex.org/W2074703985","https://openalex.org/W2081530255","https://openalex.org/W2084908610","https://openalex.org/W2088440342","https://openalex.org/W2088549477","https://openalex.org/W2090804789","https://openalex.org/W2093413487","https://openalex.org/W2096294444","https://openalex.org/W2115979107","https://openalex.org/W2121526866","https://openalex.org/W2122111042","https://openalex.org/W2122679732","https://openalex.org/W2139617657","https://openalex.org/W2142657835","https://openalex.org/W2147415348","https://openalex.org/W2149769193","https://openalex.org/W2150083385","https://openalex.org/W2153246801","https://openalex.org/W2154642048","https://openalex.org/W2157076973","https://openalex.org/W2160142494","https://openalex.org/W2165299997","https://openalex.org/W2402846924","https://openalex.org/W2543580944","https://openalex.org/W2752128027","https://openalex.org/W3021597811","https://openalex.org/W3121926921"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Abstract:":[0],"For":[1],"de":[2],"novo":[3],"pattern":[4,14,86,129],"mining":[5,19,87],"in":[6],"genomic":[7],"sequences,":[8],"the":[9,28,35,40,63,68,74,141,145,154,184,187,200],"main":[10],"issues":[11],"are":[12,32,59,124],"constructing":[13],"definition":[15],"model":[16,130],"(PDM)":[17],"and":[18,27,67,70,98,120,152,164,172,177,192],"sequence":[20],"patterns":[21,31,189],"(MSP).":[22],"The":[23,43,103,132,169],"representations":[24],"of":[25,30,55,93,112,147],"PDMs":[26,45],"discovery":[29],"functionally":[33],"dependent;":[34],"performances":[36],"thus":[37],"depend":[38],"on":[39],"adopted":[41],"PDMs.":[42],"popular":[44],"provide":[46],"only":[47],"descriptive":[48],"patterns;":[49],"they":[50],"lack":[51],"multifaceted":[52],"considerations.":[53],"Many":[54],"existing":[56],"MSP":[57,100],"methods":[58],"tied":[60],"up":[61],"with":[62,144],"exclusively":[64],"devised":[65],"PDMs,":[66],"specialized":[69],"sophisticated":[71],"models":[72],"make":[73],"mined":[75],"results":[76],"hard":[77],"to":[78,139,179],"be":[79],"reused.":[80],"In":[81],"this":[82],"research,":[83],"an":[84],"integrative":[85],"system":[88],"is":[89,156],"proposed,":[90],"which":[91,123],"consists":[92],"a":[94,127,135],"computationoriented":[95],"PDM":[96],"(CO-PDM)":[97],"general-purpose":[99],"(GP-MSP)":[101],"methods.":[102],"CO-PDM":[104],"defines":[105],"four":[106],"computational":[107],"concerns":[108],"(CCs)":[109],"as":[110],"facets":[111],"MSP:":[113],"expression":[114],"(E),":[115],"location":[116],"(L),":[117],"range":[118],"(R)":[119],"weight":[121],"(W),":[122],"integrated":[125],"into":[126],"frame-relayed":[128,136],"(FRPM).":[131],"GP-MSP":[133,173],"develops":[134],"search":[137],"strategy":[138],"resolve":[140],"ELR-CCs":[142],"firstly,":[143],"aids":[146],"criticalparameter":[148],"automating":[149],"(CPA)":[150],"procedure;":[151],"then":[153],"W-CC":[155],"determined":[157],"by":[158],"hybridizing":[159],"particle":[160],"swarm":[161],"optimization":[162],"(PSO)":[163],"artificial":[165],"neural":[166],"network":[167],"(ANN).":[168],"proposed":[170],"FRPM":[171],"had":[174],"been":[175],"implemented":[176],"applied":[178],"22,448":[180],"human":[181],"introns;":[182],"from":[183],"results,":[185],"all":[186],"well-known":[188],"were":[190,196],"recovered":[191],"some":[193],"new":[194],"ones":[195],"also":[197],"discovered.":[198],"Furthermore,":[199]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
