{"id":"https://openalex.org/W2139372442","doi":"https://doi.org/10.3217/jucs-014-22-3767","title":"Adapting Clinical Ontologies in Real-World Environments","display_name":"Adapting Clinical Ontologies in Real-World Environments","publication_year":2020,"publication_date":"2020-04-07","ids":{"openalex":"https://openalex.org/W2139372442","doi":"https://doi.org/10.3217/jucs-014-22-3767","mag":"2139372442","pmid":"https://pubmed.ncbi.nlm.nih.gov/20390048"},"language":"en","primary_location":{"id":"pmid:20390048","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20390048","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of universal computer science : J. UCS","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7000605","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Barry Smith","raw_affiliation_strings":["Institute for Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany and, Institute for Formal Ontology and Medical Information Science, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany and, Institute for Formal Ontology and Medical Information Science, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I2801240073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054197674","display_name":"Holger Stenzhorn","orcid":"https://orcid.org/0000-0001-9744-174X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Holger Stenzhorn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039035898","display_name":"Martin Boeker","orcid":"https://orcid.org/0000-0003-2972-2042"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin Boeker","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5101773732","display_name":"Stefan Schulz","orcid":"https://orcid.org/0000-0001-7222-3287"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Schulz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5218,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.59806168,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"22","first_page":"3767","last_page":"3780"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9708999991416931,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8221361637115479},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7777596116065979},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6998729705810547},{"id":"https://openalex.org/keywords/semantic-interoperability","display_name":"Semantic interoperability","score":0.6121572852134705},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.4611210525035858},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.46014603972435},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.4554736614227295},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4530009627342224},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4478394687175751},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3409954905509949},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.33565062284469604},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25578874349594116},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09560409188270569},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.07283511757850647}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8221361637115479},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7777596116065979},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6998729705810547},{"id":"https://openalex.org/C192800085","wikidata":"https://www.wikidata.org/wiki/Q5258530","display_name":"Semantic interoperability","level":3,"score":0.6121572852134705},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.4611210525035858},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.46014603972435},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.4554736614227295},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4530009627342224},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4478394687175751},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3409954905509949},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.33565062284469604},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25578874349594116},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09560409188270569},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.07283511757850647},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"pmid:20390048","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20390048","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of universal computer science : J. UCS","raw_type":null},{"id":"pmh:oai:zenodo.org:7000605","is_oa":true,"landing_page_url":"https://zenodo.org/record/7000605","pdf_url":"https://zenodo.org/record/7000605","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 14((22)) 3767-3780","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.299.1288","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.299.1288","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ontology.buffalo.edu/smith/articles/clinical_ontologies.pdf","raw_type":"text"},{"id":"pmh:oai:philarchive.org/rec/STEACO-11","is_oa":false,"landing_page_url":"https://philarchive.org/rec/STEACO-11","pdf_url":null,"source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:philpapers.org/rec/STEACO-11","is_oa":false,"landing_page_url":"https://philpapers.org/rec/STEACO-11","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2853050","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2853050","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Univers. Comput Sci","raw_type":"Text"},{"id":"doi:10.3217/jucs-014-22-3767","is_oa":true,"landing_page_url":"https://doi.org/10.3217/jucs-014-22-3767","pdf_url":null,"source":{"id":"https://openalex.org/S4306400660","display_name":"TUGraz OPEN Library (Graz University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4092182","host_organization_name":"Graz University of Technology","host_organization_lineage":["https://openalex.org/I4092182"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"DataPaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7000605","is_oa":true,"landing_page_url":"https://zenodo.org/record/7000605","pdf_url":"https://zenodo.org/record/7000605","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JUCS - Journal of Universal Computer Science 14((22)) 3767-3780","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4300000071525574},{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G2225135173","display_name":null,"funder_award_id":"U54 HG004028","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G590851054","display_name":null,"funder_award_id":"IST-027703","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8501613266","display_name":null,"funder_award_id":"027703","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320306217","display_name":"Alliance for Cancer Gene Therapy","ror":"https://ror.org/00mms0j12"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2139372442.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W108416322","https://openalex.org/W150323077","https://openalex.org/W183058255","https://openalex.org/W199406409","https://openalex.org/W1499145042","https://openalex.org/W1501546233","https://openalex.org/W1555563750","https://openalex.org/W1582774629","https://openalex.org/W1868677026","https://openalex.org/W1940888119","https://openalex.org/W1984836666","https://openalex.org/W2096679230","https://openalex.org/W2113142309","https://openalex.org/W2113164419","https://openalex.org/W2124957697","https://openalex.org/W2153241479","https://openalex.org/W2154829072","https://openalex.org/W2158623598","https://openalex.org/W2160674432","https://openalex.org/W2163670493","https://openalex.org/W2237564809","https://openalex.org/W2285753128","https://openalex.org/W2911270358"],"related_works":["https://openalex.org/W4386953431","https://openalex.org/W2355850745","https://openalex.org/W2109385585","https://openalex.org/W2157800466","https://openalex.org/W2388051831","https://openalex.org/W4292980915","https://openalex.org/W2531681040","https://openalex.org/W2908350895","https://openalex.org/W3209454962","https://openalex.org/W2885367039"],"abstract_inverted_index":{"The":[0],"desideratum":[1],"of":[2,32,43,89],"semantic":[3],"interoperability":[4],"has":[5,47],"been":[6,48],"intensively":[7],"discussed":[8],"in":[9,13,75,97],"medical":[10],"informatics":[11],"circles":[12],"recent":[14],"years.":[15],"Originally,":[16],"experts":[17],"assumed":[18],"that":[19],"this":[20],"issue":[21],"could":[22],"be":[23],"sufficiently":[24],"addressed":[25],"by":[26],"insisting":[27],"simply":[28],"on":[29],"the":[30,41,44,70,83,94],"application":[31],"shared":[33],"clinical":[34,37,58,61,72,101],"terminologies":[35,62],"or":[36],"information":[38,64],"models.":[39,65],"However,":[40],"use":[42],"term":[45],"'ontology'":[46],"steadily":[49],"increasing":[50],"more":[51],"recently.":[52],"We":[53,103],"discuss":[54,82],"criteria":[55],"for":[56],"distinguishing":[57],"ontologies":[59,73],"from":[60,108],"and":[63,93],"Then,":[66],"we":[67,81],"briefly":[68],"present":[69],"role":[71],"play":[74],"two":[76,109],"multicentric":[77],"research":[78],"projects.":[79,111],"Finally,":[80],"interactions":[84],"between":[85],"these":[86],"different":[87],"kinds":[88],"knowledge":[90],"representation":[91],"artifacts":[92],"stakeholders":[95],"involved":[96],"developing":[98],"interoperational":[99],"real-world":[100],"applications.":[102],"provide":[104],"ontology":[105],"engineering":[106],"examples":[107],"EU-funded":[110]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-17T05:52:16.776730","created_date":"2025-10-10T00:00:00"}
