{"id":"https://openalex.org/W4402198424","doi":"https://doi.org/10.31577/cai_2024_4_777","title":"Identification of KLF9 and FOSL2 as Endoplasmic Reticulum Stress Signature Genes in Osteoarthritis with Multiple Machine Learning Approaches","display_name":"Identification of KLF9 and FOSL2 as Endoplasmic Reticulum Stress Signature Genes in Osteoarthritis with Multiple Machine Learning Approaches","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4402198424","doi":"https://doi.org/10.31577/cai_2024_4_777"},"language":"en","primary_location":{"id":"doi:10.31577/cai_2024_4_777","is_oa":true,"landing_page_url":"https://doi.org/10.31577/cai_2024_4_777","pdf_url":"https://www.cai.sk/ojs/index.php/cai/article/download/2024_4_777/1302","source":{"id":"https://openalex.org/S4210200093","display_name":"Computing and Informatics","issn_l":"1335-9150","issn":["1335-9150","2585-8807"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing and Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.cai.sk/ojs/index.php/cai/article/download/2024_4_777/1302","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042450429","display_name":"Wenfei Xu","orcid":"https://orcid.org/0000-0003-4257-0100"},"institutions":[{"id":"https://openalex.org/I4210106687","display_name":"The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine","ror":"https://ror.org/01qh7se39","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106687"]},{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenfei Xu","raw_affiliation_strings":["The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China","institution_ids":["https://openalex.org/I4210106687","https://openalex.org/I4210113348"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047424852","display_name":"Qijie Mei","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106687","display_name":"The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine","ror":"https://ror.org/01qh7se39","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106687"]},{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qijie Mei","raw_affiliation_strings":["The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China","institution_ids":["https://openalex.org/I4210106687","https://openalex.org/I4210113348"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058304315","display_name":"Kan Duan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106687","display_name":"The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine","ror":"https://ror.org/01qh7se39","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106687"]},{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kan Duan","raw_affiliation_strings":["The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China","institution_ids":["https://openalex.org/I4210106687","https://openalex.org/I4210113348"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109775754","display_name":"Chunyu Ming","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145937","display_name":"Ruikang Affiliated Hospital of Guangxi Medical University","ror":"https://ror.org/04zdsga82","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210145937"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunyu Ming","raw_affiliation_strings":["Ruikang Affiliated Hospital of Guangxi Medical University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ruikang Affiliated Hospital of Guangxi Medical University, Nanning, China","institution_ids":["https://openalex.org/I4210145937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100420259","display_name":"Yanhong Li","orcid":"https://orcid.org/0009-0007-8361-3310"},"institutions":[{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanhong Li","raw_affiliation_strings":["Guangxi Traditional Chinese Medical University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangxi Traditional Chinese Medical University, Nanning, China","institution_ids":["https://openalex.org/I4210113348"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100509314","display_name":"Jinrong Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106687","display_name":"The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine","ror":"https://ror.org/01qh7se39","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106687"]},{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinrong Guo","raw_affiliation_strings":["The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China","institution_ids":["https://openalex.org/I4210106687","https://openalex.org/I4210113348"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103156679","display_name":"Qi Hu","orcid":"https://orcid.org/0000-0002-1341-1314"},"institutions":[{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Hu","raw_affiliation_strings":["Guangxi Traditional Chinese Medical University, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangxi Traditional Chinese Medical University, Nanning, China","institution_ids":["https://openalex.org/I4210113348"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041571735","display_name":"Chao Zeng","orcid":"https://orcid.org/0000-0003-4889-5731"},"institutions":[{"id":"https://openalex.org/I4210106687","display_name":"The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine","ror":"https://ror.org/01qh7se39","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106687"]},{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Zeng","raw_affiliation_strings":["The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China","institution_ids":["https://openalex.org/I4210106687","https://openalex.org/I4210113348"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062928809","display_name":"Changshen Yuan","orcid":"https://orcid.org/0009-0000-5573-2469"},"institutions":[{"id":"https://openalex.org/I4210106687","display_name":"The First Affiliated Hospital of Guangxi University of Traditional Chinese Medicine","ror":"https://ror.org/01qh7se39","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210106687"]},{"id":"https://openalex.org/I4210113348","display_name":"Guangxi University of Chinese Medicine","ror":"https://ror.org/024v0gx67","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210113348"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changshen Yuan","raw_affiliation_strings":["The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China","institution_ids":["https://openalex.org/I4210106687","https://openalex.org/I4210113348"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12666019,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"43","issue":"4","first_page":"777","last_page":"796"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13426","display_name":"Kruppel-like factors research","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13426","display_name":"Kruppel-like factors research","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9635999798774719,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/endoplasmic-reticulum","display_name":"Endoplasmic reticulum","score":0.8125884532928467},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6500877141952515},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.5639394521713257},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48864418268203735},{"id":"https://openalex.org/keywords/osteoarthritis","display_name":"Osteoarthritis","score":0.453060507774353},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4440717101097107},{"id":"https://openalex.org/keywords/stress","display_name":"Stress (linguistics)","score":0.4183427393436432},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38478007912635803},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32270753383636475},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30542296171188354},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.19109287858009338},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.14765873551368713}],"concepts":[{"id":"https://openalex.org/C158617107","wikidata":"https://www.wikidata.org/wiki/Q79927","display_name":"Endoplasmic reticulum","level":2,"score":0.8125884532928467},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6500877141952515},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.5639394521713257},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48864418268203735},{"id":"https://openalex.org/C2776164576","wikidata":"https://www.wikidata.org/wiki/Q62736","display_name":"Osteoarthritis","level":3,"score":0.453060507774353},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4440717101097107},{"id":"https://openalex.org/C21036866","wikidata":"https://www.wikidata.org/wiki/Q181767","display_name":"Stress (linguistics)","level":2,"score":0.4183427393436432},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38478007912635803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32270753383636475},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30542296171188354},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.19109287858009338},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.14765873551368713},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.31577/cai_2024_4_777","is_oa":true,"landing_page_url":"https://doi.org/10.31577/cai_2024_4_777","pdf_url":"https://www.cai.sk/ojs/index.php/cai/article/download/2024_4_777/1302","source":{"id":"https://openalex.org/S4210200093","display_name":"Computing and Informatics","issn_l":"1335-9150","issn":["1335-9150","2585-8807"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing and Informatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.31577/cai_2024_4_777","is_oa":true,"landing_page_url":"https://doi.org/10.31577/cai_2024_4_777","pdf_url":"https://www.cai.sk/ojs/index.php/cai/article/download/2024_4_777/1302","source":{"id":"https://openalex.org/S4210200093","display_name":"Computing and Informatics","issn_l":"1335-9150","issn":["1335-9150","2585-8807"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computing and Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.44999998807907104,"display_name":"Zero hunger"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327522","display_name":"Guangxi University","ror":"https://ror.org/02c9qn167"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402198424.pdf","grobid_xml":"https://content.openalex.org/works/W4402198424.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1983031293","https://openalex.org/W2329067096","https://openalex.org/W2001930607","https://openalex.org/W2390927849","https://openalex.org/W2375108256","https://openalex.org/W2063538786","https://openalex.org/W2009035188","https://openalex.org/W2370978348","https://openalex.org/W2054732939","https://openalex.org/W3204620786"],"abstract_inverted_index":{"Objective:":[0],"This":[1],"study":[2],"aims":[3],"to":[4,19,55,121,152,261],"screen":[5,122],"osteoarthritis":[6],"(OA)":[7],"endoplasmic":[8,62,124,253],"reticulum":[9,63,125,254],"(ER)":[10],"stress":[11,126,191,215,255,309],"signature":[12,127,256,267],"genes":[13,46,96,164,192,216,268,302],"using":[14],"a":[15,320],"machine":[16,101],"learning":[17,102,293],"approach":[18],"provide":[20,319],"new":[21,321],"insights":[22],"and":[23,32,42,66,81,87,108,114,157,179,223,240,248,294,303,318],"methods":[24],"for":[25,133,323],"OA":[26,61,123,134,153,213,252,266,274],"treatment.":[27,326],"Methods:":[28],"We":[29,51,70,147],"obtained":[30,148],"GSE55235":[31],"GSE98918":[33],"datasets":[34],"from":[35,47],"the":[36,48,144,169,197,221,301],"gene":[37,88,116],"expression":[38,272,285],"omnibus":[39],"(GEO)":[40],"database":[41],"identified":[43,246],"ER":[44,154,190,214,308],"stress-related":[45,64],"GeneCard":[49],"database.":[50],"used":[52,100],"R":[53],"software":[54],"perform":[56],"data":[57],"batch":[58],"correction,":[59],"extract":[60],"genes,":[65,257],"conduct":[67],"differential":[68],"analysis.":[69],"performed":[71],"functional":[72],"Gene":[73],"Ontology":[74],"(GO)":[75],"analysis,":[76,86,236,239],"Kyoto":[77],"Encyclopedia":[78],"of":[79,172,203,225,243,307],"Genes":[80],"Genomes":[82],"(KEGG)":[83],"signaling":[84,184],"pathway":[85],"set":[89],"enrichment":[90,159],"analysis":[91,119,160,187,242,297],"(GSEA)":[92],"on":[93],"differentially":[94],"expressed":[95],"(DEGs).":[97],"Additionally,":[98],"we":[99,245],"algorithms,":[103],"including":[104],"Least":[105],"Absolute":[106],"Shrinkage":[107],"Selection":[109],"Operator":[110],"(LASSO)":[111],"regression,":[112],"SVM-RFE,":[113],"weighted":[115],"co-expression":[117,295],"network":[118,296],"(WGCNA),":[120],"genes.":[128],"Human":[129],"chondrocytes":[130],"were":[131,141,165,193,217,259],"selected":[132],"model":[135],"establishment,":[136],"cells":[137],"without":[138],"any":[139],"treatment":[140],"served":[142],"as":[143,250,265],"control.":[145],"Results:":[146],"236":[149],"DEGs":[150],"related":[151],"stress.":[155],"GO":[156],"KEGG":[158],"showed":[161],"that":[162,189,279],"these":[163],"mainly":[166],"involved":[167],"in":[168,196,200,220,273,280,310],"positive":[170],"regulation":[171,199],"leukocyte":[173],"activation,":[174],"collagen-containing":[175],"extracellular":[176],"matrix,":[177],"phagosome,":[178],"other":[180],"biological":[181],"functions":[182],"or":[183],"pathways.":[185],"GSEA-GO":[186],"revealed":[188],"significantly":[194,218],"enriched":[195,219],"negative":[198],"metabolic":[201],"processes":[202],"nucleobase-containing":[204],"compounds":[205],"(NES":[206,228],"=":[207,229],"-2.50,":[208],"P":[209,231],"&lt;":[210,232,289],"0.001),":[211],"while":[212,283],"processing":[222],"presentation":[224],"peptide":[226],"antigens":[227],"2.40,":[230],"0.001).":[233],"Using":[234],"WGCNA":[235],"LASSO":[237],"regression":[238],"SVM-RFE":[241],"intersection,":[244],"KLF9":[247,271],"FOSL2":[249,284],"potential":[251,304],"which":[258,312],"found":[260],"be":[262],"more":[263],"accurate":[264],"after":[269],"validation.":[270],"group":[275],"was":[276,286],"higher":[277],"than":[278],"control":[281],"group,":[282],"lower":[287],"(P":[288],"0.05).":[290],"Conclusion:":[291],"Machine":[292],"can":[298,313],"effectively":[299],"identify":[300],"factors":[305],"characteristic":[306],"OA,":[311],"help":[314],"elucidate":[315],"its":[316],"pathogenesis":[317],"direction":[322],"better":[324],"clinical":[325]},"counts_by_year":[],"updated_date":"2026-03-06T06:45:51.903784","created_date":"2025-10-10T00:00:00"}
