{"id":"https://openalex.org/W2251872110","doi":"https://doi.org/10.3115/v1/w14-3404","title":"Automated Disease Normalization with Low Rank Approximations","display_name":"Automated Disease Normalization with Low Rank Approximations","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2251872110","doi":"https://doi.org/10.3115/v1/w14-3404","mag":"2251872110"},"language":"en","primary_location":{"id":"doi:10.3115/v1/w14-3404","is_oa":true,"landing_page_url":"https://doi.org/10.3115/v1/w14-3404","pdf_url":"https://aclanthology.org/W14-3404.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 2014","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://aclanthology.org/W14-3404.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044947146","display_name":"Robert Leaman","orcid":"https://orcid.org/0000-0003-3296-5766"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert Leaman","raw_affiliation_strings":["National Center for Biotechnology Information National Library of Medicine"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information National Library of Medicine"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information National Library of Medicine","institution_ids":["https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044947146"],"corresponding_institution_ids":["https://openalex.org/I4210109390"],"apc_list":null,"apc_paid":null,"fwci":1.6914,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.8842148,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"24","last_page":"28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.800499439239502},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7376702427864075},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.701681911945343},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6392319202423096},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.5797387361526489},{"id":"https://openalex.org/keywords/learning-to-rank","display_name":"Learning to rank","score":0.535349428653717},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.515501081943512},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.47147607803344727},{"id":"https://openalex.org/keywords/low-rank-approximation","display_name":"Low-rank approximation","score":0.4706551134586334},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.41650575399398804},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3928949236869812},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13538435101509094}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.800499439239502},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7376702427864075},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.701681911945343},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6392319202423096},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.5797387361526489},{"id":"https://openalex.org/C86037889","wikidata":"https://www.wikidata.org/wiki/Q4330127","display_name":"Learning to rank","level":3,"score":0.535349428653717},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.515501081943512},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.47147607803344727},{"id":"https://openalex.org/C90199385","wikidata":"https://www.wikidata.org/wiki/Q6692777","display_name":"Low-rank approximation","level":3,"score":0.4706551134586334},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.41650575399398804},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3928949236869812},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13538435101509094},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C25023664","wikidata":"https://www.wikidata.org/wiki/Q1575637","display_name":"Hankel matrix","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3115/v1/w14-3404","is_oa":true,"landing_page_url":"https://doi.org/10.3115/v1/w14-3404","pdf_url":"https://aclanthology.org/W14-3404.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 2014","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.675.8172","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.675.8172","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.aclweb.org/anthology/W/W14/W14-3404.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.3115/v1/w14-3404","is_oa":true,"landing_page_url":"https://doi.org/10.3115/v1/w14-3404","pdf_url":"https://aclanthology.org/W14-3404.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of BioNLP 2014","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7900000214576721}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2251872110.pdf","grobid_xml":"https://content.openalex.org/works/W2251872110.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1530032857","https://openalex.org/W1532325895","https://openalex.org/W1550258693","https://openalex.org/W1574901103","https://openalex.org/W2012688074","https://openalex.org/W2022484638","https://openalex.org/W2025423507","https://openalex.org/W2040298461","https://openalex.org/W2061166439","https://openalex.org/W2074640468","https://openalex.org/W2098162425","https://openalex.org/W2100627415","https://openalex.org/W2102575587","https://openalex.org/W2107005506","https://openalex.org/W2117130368","https://openalex.org/W2117243134","https://openalex.org/W2123439964","https://openalex.org/W2123579157","https://openalex.org/W2129038679","https://openalex.org/W2129113459","https://openalex.org/W2133627190","https://openalex.org/W2134275125","https://openalex.org/W2135046866","https://openalex.org/W2138857742","https://openalex.org/W2141599568","https://openalex.org/W2142016317","https://openalex.org/W2149151184","https://openalex.org/W2158743996","https://openalex.org/W2159583324","https://openalex.org/W2163303745","https://openalex.org/W2169099542","https://openalex.org/W2178441628","https://openalex.org/W2186301176","https://openalex.org/W2405915252","https://openalex.org/W2915128229","https://openalex.org/W6656881649","https://openalex.org/W6660951998","https://openalex.org/W6669084830","https://openalex.org/W6674809819","https://openalex.org/W6679124146","https://openalex.org/W6759052712"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2942366970","https://openalex.org/W2807634898","https://openalex.org/W1692008701","https://openalex.org/W2597588799","https://openalex.org/W4360593462","https://openalex.org/W4378713479"],"abstract_inverted_index":{"While":[0],"machine":[1,13,28],"learning":[2,14,29,36,61],"methods":[3,15],"for":[4,31],"named":[5],"entity":[6],"recognition":[7],"(mention-level":[8],"detection)":[9],"have":[10,16],"become":[11],"common,":[12],"rarely":[17],"been":[18],"applied":[19],"to":[20,37,46,83,96,132],"normalization":[21,32,102],"(concept-level":[22],"identification).":[23],"Recent":[24],"research":[25],"introduced":[26],"a":[27,43,73,124],"method":[30,95],"based":[33,77],"on":[34,78],"pairwise":[35],"rank.":[38],"This":[39],"method,":[40],"DNorm,":[41],"uses":[42],"linear":[44],"model":[45],"score":[47],"the":[48,89,92,104,109,117,128,137,143],"similarity":[49],"between":[50],"mentions":[51],"and":[52,55,112,135],"concept":[53],"names,":[54],"has":[56],"several":[57],"desirable":[58],"properties,":[59],"including":[60],"term":[62],"variation":[63],"directly":[64],"from":[65],"training":[66],"data.":[67],"In":[68],"this":[69,140],"manuscript":[70],"we":[71],"employ":[72],"dimensionality":[74],"reduction":[75,126],"technique":[76],"low-rank":[79],"matrix":[80,118],"approximation,":[81],"similar":[82],"latent":[84],"semantic":[85],"indexing.":[86],"We":[87,121],"compare":[88],"performance":[90,115],"of":[91,130,139,145],"low":[93],"rank":[94,119],"previous":[97],"work,":[98],"using":[99],"disease":[100],"name":[101],"in":[103,127,142],"NCBI":[105],"Disease":[106],"Corpus":[107],"as":[108,116],"test":[110],"case,":[111],"demonstrate":[113,123],"increased":[114],"increases.":[120],"further":[122],"significant":[125],"number":[129],"parameters":[131],"be":[133],"learned":[134],"discuss":[136],"implications":[138],"result":[141],"context":[144],"algorithm":[146],"scalability.":[147]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
