{"id":"https://openalex.org/W2113373919","doi":"https://doi.org/10.3115/v1/s14-2019","title":"BioinformaticsUA: Concept Recognition in Clinical Narratives Using a Modular and Highly Efficient Text Processing Framework","display_name":"BioinformaticsUA: Concept Recognition in Clinical Narratives Using a Modular and Highly Efficient Text Processing Framework","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2113373919","doi":"https://doi.org/10.3115/v1/s14-2019","mag":"2113373919"},"language":"en","primary_location":{"id":"doi:10.3115/v1/s14-2019","is_oa":true,"landing_page_url":"https://doi.org/10.3115/v1/s14-2019","pdf_url":"https://aclanthology.org/S14-2019.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Workshop on Semantic Evaluation (SemEval 2014)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://aclanthology.org/S14-2019.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073280030","display_name":"S\u00e9rgio Matos","orcid":"https://orcid.org/0000-0003-1941-3983"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"S\u00e9rgio Matos","raw_affiliation_strings":["University of Aveiro 3810-193 Aveiro, Portugal","University of Aveiro, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Aveiro 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109892391","display_name":"Tiago Nunes","orcid":null},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Tiago Nunes","raw_affiliation_strings":["DETI/IEETA University of Aveiro 3810-193 Aveiro, Portugal","University of Aveiro, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DETI/IEETA University of Aveiro 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524956","display_name":"Jos\u00e9 Lu\u00eds Oliveira","orcid":"https://orcid.org/0000-0002-6672-6176"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Lu\u00eds Oliveira","raw_affiliation_strings":["DETI/IEETA University of Aveiro 3810-193 Aveiro, Portugal","University of Aveiro, Aveiro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DETI/IEETA University of Aveiro 3810-193 Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I60858718"],"apc_list":null,"apc_paid":null,"fwci":0.4269,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.64517657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"135","last_page":"139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8268688917160034},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8242151737213135},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6852237582206726},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6577745676040649},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6215732097625732},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.6208797693252563},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6167593002319336},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5311974883079529},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.48568543791770935},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4645639955997467},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4135391414165497},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3621365427970886},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0783659815788269}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8268688917160034},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8242151737213135},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6852237582206726},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6577745676040649},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6215732097625732},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.6208797693252563},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6167593002319336},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5311974883079529},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.48568543791770935},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4645639955997467},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4135391414165497},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3621365427970886},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0783659815788269},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3115/v1/s14-2019","is_oa":true,"landing_page_url":"https://doi.org/10.3115/v1/s14-2019","pdf_url":"https://aclanthology.org/S14-2019.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Workshop on Semantic Evaluation (SemEval 2014)","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.3115/v1/s14-2019","is_oa":true,"landing_page_url":"https://doi.org/10.3115/v1/s14-2019","pdf_url":"https://aclanthology.org/S14-2019.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 8th International Workshop on Semantic Evaluation (SemEval 2014)","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8500000238418579,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113373919.pdf","grobid_xml":"https://content.openalex.org/works/W2113373919.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1561467090","https://openalex.org/W1573258796","https://openalex.org/W1992593537","https://openalex.org/W2046788142","https://openalex.org/W2124772738","https://openalex.org/W2178441628","https://openalex.org/W2916047559"],"related_works":["https://openalex.org/W2591697403","https://openalex.org/W3199871245","https://openalex.org/W2944728705","https://openalex.org/W2904022177","https://openalex.org/W2359348847","https://openalex.org/W3011538607","https://openalex.org/W4294432981","https://openalex.org/W2793132289","https://openalex.org/W2358294942","https://openalex.org/W4367460280"],"abstract_inverted_index":{"Clinical":[0,43],"texts,":[1],"such":[2],"as":[3],"discharge":[4],"summaries":[5],"or":[6],"test":[7],"reports,":[8],"contain":[9],"a":[10,75,84],"valuable":[11],"amount":[12],"of":[13,42,57],"information":[14],"that,":[15],"if":[16],"efficiently":[17],"and":[18,33,49,55],"effectively":[19],"mined,":[20],"could":[21],"be":[22],"used":[23],"to":[24,30,92],"infer":[25],"new":[26],"knowledge,":[27],"possibly":[28],"leading":[29],"better":[31],"diagnosis":[32],"therapeutics.":[34],"With":[35],"this":[36,69],"in":[37,60,68],"mind,":[38],"the":[39],"SemEval-2014":[40],"Analysis":[41],"Text":[44],"task":[45],"aimed":[46],"at":[47],"assessing":[48],"improving":[50],"current":[51],"methods":[52],"for":[53,79],"identification":[54],"normalization":[56],"concepts":[58],"occurring":[59],"clinical":[61],"narrative.":[62],"This":[63],"paper":[64],"describes":[65],"our":[66,94],"approach":[67],"task,":[70],"which":[71],"was":[72],"based":[73],"on":[74],"fully":[76],"modular":[77],"architecture":[78],"text":[80],"mining.":[81],"We":[82],"followed":[83],"pure":[85],"dictionary-based":[86],"approach,":[87],"after":[88],"performing":[89],"error":[90],"analysis":[91],"refine":[93],"dictionaries.":[95]},"counts_by_year":[{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
