{"id":"https://openalex.org/W2779179653","doi":"https://doi.org/10.26615/978-954-452-044-1_010","title":"POMELO: Medline corpus with manually annotated food-drug interactions","display_name":"POMELO: Medline corpus with manually annotated food-drug interactions","publication_year":2017,"publication_date":"2017-11-10","ids":{"openalex":"https://openalex.org/W2779179653","doi":"https://doi.org/10.26615/978-954-452-044-1_010","mag":"2779179653"},"language":"en","primary_location":{"id":"doi:10.26615/978-954-452-044-1_010","is_oa":true,"landing_page_url":"http://doi.org/10.26615/978-954-452-044-1_010","pdf_url":"https://doi.org/10.26615/978-954-452-044-1_010","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Biomedical NLP Workshop","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.26615/978-954-452-044-1_010","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"LIMSI, CNRS, Universit\u00e9 Paris-Saclay, Orsay, France / Universit\u00e9 Paris 13, Sorbonne Paris Cit\u00e9, Villetaneuse, France","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"LIMSI, CNRS, Universit\u00e9 Paris-Saclay, Orsay, France / Universit\u00e9 Paris 13, Sorbonne Paris Cit\u00e9, Villetaneuse, France","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014683954","display_name":"Thierry Hamon","orcid":"https://orcid.org/0000-0002-1521-4875"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210090571","display_name":"Institut des Sciences des Plantes de Paris Saclay","ror":"https://ror.org/00ajjta07","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210090571","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thierry Hamon","raw_affiliation_strings":["LIMSI, CNRS, Universit Paris-Saclay, Orsay, France","Universit Paris 13, Sorbonne Paris Cit, Villetaneuse, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIMSI, CNRS, Universit Paris-Saclay, Orsay, France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210090571","https://openalex.org/I4210115485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit Paris 13, Sorbonne Paris Cit, Villetaneuse, France","institution_ids":["https://openalex.org/I4210091279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050836481","display_name":"Vincent Tabanou","orcid":null},"institutions":[{"id":"https://openalex.org/I3018323443","display_name":"Centre Hospitalier Universitaire de Bordeaux","ror":"https://ror.org/01hq89f96","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I3018323443"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Tabanou","raw_affiliation_strings":["CHU de Bordeaux, Pole de sante publique, Service d'information mdicale, Bordeaux, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CHU de Bordeaux, Pole de sante publique, Service d'information mdicale, Bordeaux, France","institution_ids":["https://openalex.org/I3018323443"]}]},{"author_position":"middle","author":{"id":null,"display_name":"CHU de Bordeaux, Pole de sante publique, Service d\u2019information m\u00e9dicale, Bordeaux, France","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"CHU de Bordeaux, Pole de sante publique, Service d\u2019information m\u00e9dicale, Bordeaux, France","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090250858","display_name":"Fleur Mougin","orcid":"https://orcid.org/0000-0002-7436-3010"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fleur Mougin","raw_affiliation_strings":["Univ. Bordeaux, Inserm, Bordeaux Population Health Research Center, team ERIAS, UMR 1219, F-33000 Bordeaux, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Bordeaux, Inserm, Bordeaux Population Health Research Center, team ERIAS, UMR 1219, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I4210106115","https://openalex.org/I154526488","https://openalex.org/I15057530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007781745","display_name":"Natalia Grabar","orcid":"https://orcid.org/0000-0002-0237-4554"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Natalia Grabar","raw_affiliation_strings":["CNRS UMR 8163 STL, Universit Lille 3, 59653 Villeneuve d'Ascq, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS UMR 8163 STL, Universit Lille 3, 59653 Villeneuve d'Ascq, France","institution_ids":["https://openalex.org/I2279609970","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":null,"display_name":"CNRS UMR 8163 STL, Universit\u00e9 Lille, France","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"CNRS UMR 8163 STL, Universit\u00e9 Lille, France","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5007601836","display_name":"Frantz Thiessard","orcid":"https://orcid.org/0000-0002-9469-3156"},"institutions":[{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I3018323443","display_name":"Centre Hospitalier Universitaire de Bordeaux","ror":"https://ror.org/01hq89f96","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I3018323443"]},{"id":"https://openalex.org/I4210106115","display_name":"Bordeaux Population Health","ror":"https://ror.org/00xzzba89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I154526488","https://openalex.org/I4210106115"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Frantz Thiessard","raw_affiliation_strings":["CHU de Bordeaux, Pole de sante publique, Service d'information mdicale, Bordeaux, France","Univ. Bordeaux, Inserm, Bordeaux Population Health Research Center, team ERIAS, UMR 1219, F-33000 Bordeaux, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CHU de Bordeaux, Pole de sante publique, Service d'information mdicale, Bordeaux, France","institution_ids":["https://openalex.org/I3018323443"]},{"raw_affiliation_string":"Univ. Bordeaux, Inserm, Bordeaux Population Health Research Center, team ERIAS, UMR 1219, F-33000 Bordeaux, France","institution_ids":["https://openalex.org/I4210106115","https://openalex.org/I154526488","https://openalex.org/I15057530"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2243,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5795038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"73","last_page":"80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.929099977016449,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6810062527656555},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.5012001991271973},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47019681334495544},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4530203342437744},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4402993321418762},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39247599244117737},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2325868010520935},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10215896368026733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0976286232471466}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6810062527656555},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.5012001991271973},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47019681334495544},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4530203342437744},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4402993321418762},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39247599244117737},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2325868010520935},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10215896368026733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0976286232471466},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26615/978-954-452-044-1_010","is_oa":true,"landing_page_url":"http://doi.org/10.26615/978-954-452-044-1_010","pdf_url":"https://doi.org/10.26615/978-954-452-044-1_010","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Biomedical NLP Workshop","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-01591691v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-01591691","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Recent Advances in Natural Language Processing (RANLP), Sep 2017, Varna, Bulgaria. pp.73-80, &#x27E8;10.26615/978-954-452-044-1_010&#x27E9;","raw_type":"Conference papers"}],"best_oa_location":{"id":"doi:10.26615/978-954-452-044-1_010","is_oa":true,"landing_page_url":"http://doi.org/10.26615/978-954-452-044-1_010","pdf_url":"https://doi.org/10.26615/978-954-452-044-1_010","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Biomedical NLP Workshop","raw_type":"proceedings-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G8332583186","display_name":"Diseases, Food-Drug Interactions","funder_award_id":"ANR-16-CE23-0012","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2779179653.pdf","grobid_xml":"https://content.openalex.org/works/W2779179653.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W1919055890","https://openalex.org/W1991434914","https://openalex.org/W2017675395","https://openalex.org/W2023678134","https://openalex.org/W2046899569","https://openalex.org/W2067704478","https://openalex.org/W2073898453","https://openalex.org/W2085752173","https://openalex.org/W2086105910","https://openalex.org/W2111825994","https://openalex.org/W2114259235","https://openalex.org/W2115461720","https://openalex.org/W2140604557","https://openalex.org/W2142572836","https://openalex.org/W2143144980","https://openalex.org/W2148488766","https://openalex.org/W2152899866","https://openalex.org/W2170146596","https://openalex.org/W2257876130","https://openalex.org/W2264517602"],"related_works":["https://openalex.org/W4206379684","https://openalex.org/W2492624138","https://openalex.org/W2366105490","https://openalex.org/W2580680567","https://openalex.org/W4287027430","https://openalex.org/W4285170202","https://openalex.org/W114270996","https://openalex.org/W2396656278","https://openalex.org/W2407625558","https://openalex.org/W3192589309"],"abstract_inverted_index":{"When":[0],"patients":[1],"take":[2],"more":[3],"than":[4],"one":[5],"medication,":[6],"they":[7],"may":[8,34],"be":[9,178],"at":[10],"risk":[11],"of":[12,72,117,127,141],"drug":[13,20],"interactions,":[14],"which":[15],"means":[16],"that":[17,108],"a":[18,94],"given":[19],"can":[21,66],"cause":[22,68],"unexpected":[23],"effects":[24,33],"when":[25,36],"taken":[26,39],"in":[27,61],"combination":[28],"with":[29,41,51,144],"other":[30],"drugs.":[31,74],"Similar":[32],"occur":[35],"drugs":[37,63],"are":[38],"together":[40],"some":[42],"food":[43],"or":[44],"beverages.":[45],"For":[46],"instance,":[47],"grapefruit":[48],"has":[49],"interactions":[50,79],"several":[52],"drugs,":[53],"because":[54],"its":[55],"active":[56],"ingredients":[57],"inhibit":[58],"enzymes":[59],"involved":[60],"the":[62,90,110,115,118,122,133,182],"metabolism":[64],"and":[65,93,103,121,135,139,156],"then":[67],"an":[69],"excessive":[70],"dosage":[71],"these":[73],"Yet,":[75],"information":[76,145],"on":[77,146],"food/drug":[78,147],"is":[80,86,98,112,130,163,171],"poorly":[81],"researched.":[82],"The":[83,125,169],"current":[84],"research":[85,111,183],"mainly":[87],"provided":[88,99],"by":[89,100,166],"medical":[91],"domain":[92],"very":[95],"tentative":[96],"work":[97,129],"computer":[101],"sciences":[102],"NLP":[104],"domains.":[105],"One":[106],"factor":[107],"motivates":[109],"related":[113],"to":[114,131,159],"availability":[116],"annotated":[119,165,175],"corpora":[120],"reference":[123],"data.":[124],"purpose":[126],"our":[128],"describe":[132],"rationale":[134],"approach":[136],"for":[137,181],"creation":[138],"annotation":[140],"scientific":[142],"corpus":[143,150,170,176],"interactions.":[148],"This":[149,174],"contains":[151],"639":[152],"MEDLINE":[153],"citations":[154],"(titles":[155],"abstracts),":[157],"corresponding":[158],"5,752":[160],"sentences.":[161],"It":[162],"manually":[164],"two":[167],"experts.":[168],"named":[172],"POMELO.":[173],"will":[177],"made":[179],"available":[180],"purposes.":[184]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2018-01-05T00:00:00"}
