{"id":"https://openalex.org/W2776891148","doi":"https://doi.org/10.26615/978-954-452-044-1_006","title":"Entity-Centric Information Access with the Human-in-the-Loop for the Biomedical Domains","display_name":"Entity-Centric Information Access with the Human-in-the-Loop for the Biomedical Domains","publication_year":2017,"publication_date":"2017-11-10","ids":{"openalex":"https://openalex.org/W2776891148","doi":"https://doi.org/10.26615/978-954-452-044-1_006","mag":"2776891148"},"language":"en","primary_location":{"id":"doi:10.26615/978-954-452-044-1_006","is_oa":true,"landing_page_url":"https://doi.org/10.26615/978-954-452-044-1_006","pdf_url":"https://doi.org/10.26615/978-954-452-044-1_006","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Biomedical NLP Workshop","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.26615/978-954-452-044-1_006","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039544387","display_name":"Seid Muhie Yimam","orcid":"https://orcid.org/0000-0002-8289-388X"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I884043246","display_name":"Hamburg University of Technology","ror":"https://ror.org/04bs1pb34","country_code":"DE","type":"education","lineage":["https://openalex.org/I884043246"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Seid Muhie Yimam","raw_affiliation_strings":["Language Technology Group, Department of Informatics Universitt Hamburg, Germany","Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universitt Hamburg, Germany","institution_ids":["https://openalex.org/I884043246"]},{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033413102","display_name":"Steffen Remus","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I884043246","display_name":"Hamburg University of Technology","ror":"https://ror.org/04bs1pb34","country_code":"DE","type":"education","lineage":["https://openalex.org/I884043246"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen Remus","raw_affiliation_strings":["Language Technology Group, Department of Informatics Universitt Hamburg, Germany","Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universitt Hamburg, Germany","institution_ids":["https://openalex.org/I884043246"]},{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026157285","display_name":"Alexander Panchenko","orcid":"https://orcid.org/0000-0001-6097-6118"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I884043246","display_name":"Hamburg University of Technology","ror":"https://ror.org/04bs1pb34","country_code":"DE","type":"education","lineage":["https://openalex.org/I884043246"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Panchenko","raw_affiliation_strings":["Language Technology Group, Department of Informatics Universitt Hamburg, Germany","Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universitt Hamburg, Germany","institution_ids":["https://openalex.org/I884043246"]},{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034657358","display_name":"Andreas Holzinger","orcid":"https://orcid.org/0000-0002-6786-5194"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Andreas Holzinger","raw_affiliation_strings":["Research Unit HCI-KDD Institute for Medical Informatics, Statistics and Documentation Medical University Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Unit HCI-KDD Institute for Medical Informatics, Statistics and Documentation Medical University Graz, Austria","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021287757","display_name":"Chris Biemann","orcid":"https://orcid.org/0000-0002-8449-9624"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I884043246","display_name":"Hamburg University of Technology","ror":"https://ror.org/04bs1pb34","country_code":"DE","type":"education","lineage":["https://openalex.org/I884043246"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chris Biemann","raw_affiliation_strings":["Language Technology Group, Department of Informatics Universitt Hamburg, Germany","Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universitt Hamburg, Germany","institution_ids":["https://openalex.org/I884043246"]},{"raw_affiliation_string":"Language Technology Group, Department of Informatics Universit\u00e4t Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5034657358"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"42","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8508766889572144},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6259180903434753},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.5528382062911987},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5470864772796631},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5328875780105591},{"id":"https://openalex.org/keywords/human-in-the-loop","display_name":"Human-in-the-loop","score":0.4967389702796936},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4908595681190491},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4512448012828827},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3649183511734009},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.28341829776763916},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2240559458732605}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8508766889572144},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6259180903434753},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.5528382062911987},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5470864772796631},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5328875780105591},{"id":"https://openalex.org/C2780626000","wikidata":"https://www.wikidata.org/wiki/Q5936775","display_name":"Human-in-the-loop","level":2,"score":0.4967389702796936},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4908595681190491},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4512448012828827},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3649183511734009},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.28341829776763916},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2240559458732605},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.26615/978-954-452-044-1_006","is_oa":true,"landing_page_url":"https://doi.org/10.26615/978-954-452-044-1_006","pdf_url":"https://doi.org/10.26615/978-954-452-044-1_006","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Biomedical NLP Workshop","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.26615/978-954-452-044-1_006","is_oa":true,"landing_page_url":"https://doi.org/10.26615/978-954-452-044-1_006","pdf_url":"https://doi.org/10.26615/978-954-452-044-1_006","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Biomedical NLP Workshop","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320882","display_name":"Volkswagen Foundation","ror":"https://ror.org/03bsmfz84"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2776891148.pdf","grobid_xml":"https://content.openalex.org/works/W2776891148.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W21497345","https://openalex.org/W93452043","https://openalex.org/W193010585","https://openalex.org/W291570921","https://openalex.org/W1570095520","https://openalex.org/W1604638557","https://openalex.org/W1817600527","https://openalex.org/W1967112791","https://openalex.org/W1971978276","https://openalex.org/W2015720094","https://openalex.org/W2042037135","https://openalex.org/W2112600538","https://openalex.org/W2123556395","https://openalex.org/W2133109597","https://openalex.org/W2251026067","https://openalex.org/W2300445845","https://openalex.org/W2338784100","https://openalex.org/W2511841151","https://openalex.org/W2533611849","https://openalex.org/W2742558454","https://openalex.org/W2767566423","https://openalex.org/W2800683848","https://openalex.org/W4211165624","https://openalex.org/W4301117789"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,24],"describe":[4,60],"the":[5,12,35,38,49,130,157,160,176],"concept":[6],"of":[7,22,29,37,51,57,79,107,115,132],"entity-centric":[8],"information":[9,54,91,109],"access":[10],"for":[11,71,90],"biomedical":[13,136,147],"domain.":[14],"With":[15],"entity":[16],"recognition":[17],"technologies":[18],"approaching":[19],"acceptable":[20],"levels":[21],"accuracy,":[23],"put":[25],"forward":[26],"a":[27,76,87,119,142,163],"paradigm":[28],"document":[30,82],"browsing":[31],"and":[32,40,104,111,171,174,182],"searching":[33],"where":[34,168],"entities":[36,99],"domain":[39],"their":[41],"relations":[42,56],"are":[43],"explicitly":[44],"modeled":[45],"to":[46,135,141,153,178],"provide":[47],"users":[48,169],"possibility":[50],"collecting":[52],"exhaustive":[53],"on":[55,146],"interest.":[58],"We":[59,124],"three":[61],"working":[62],"prototypes":[63],"along":[64],"these":[65,133],"lines:":[66],"NEW/S/LEAK,":[67],"which":[68,85,117,138],"was":[69],"developed":[70],"investigative":[72],"journalists":[73],"who":[74],"need":[75],"quick":[77],"overview":[78],"large":[80],"leaked":[81],"collections;":[83],"STORYFINDER,":[84],"is":[86,105,118,139,156],"personalized":[88,108],"organizer":[89],"found":[92],"in":[93,162],"web":[94],"pages":[95],"that":[96],"allows":[97],"adding":[98],"as":[100,102],"well":[101],"relations,":[103],"capable":[106],"management;":[110],"adaptive":[112],"annotation":[113,122],"capabilities":[114],"WEBANNO,":[116],"general-purpose":[120],"linguistic":[121],"tool.":[123],"will":[125],"discuss":[126],"future":[127],"steps":[128],"towards":[129],"adaptation":[131],"tools":[134],"data,":[137],"subject":[140],"recently":[143],"started":[144],"project":[145],"knowledge":[148],"acquisition.":[149],"A":[150],"key":[151],"difference":[152],"other":[154],"approaches":[155],"centering":[158],"around":[159],"user":[161],"Human-in-the-Loop":[164],"machine":[165],"learning":[166],"approach,":[167],"define":[170],"extend":[172],"categories":[173],"enable":[175],"system":[177],"improve":[179],"via":[180],"feedback":[181],"interaction.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2018-01-05T00:00:00"}
