{"id":"https://openalex.org/W4405022436","doi":"https://doi.org/10.26599/bdma.2024.9020024","title":"Quick-MIMIC: A Multimodal Data Extraction Pipeline for MIMIC with Parallelization","display_name":"Quick-MIMIC: A Multimodal Data Extraction Pipeline for MIMIC with Parallelization","publication_year":2024,"publication_date":"2024-12-01","ids":{"openalex":"https://openalex.org/W4405022436","doi":"https://doi.org/10.26599/bdma.2024.9020024"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2024.9020024","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020024","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.26599/bdma.2024.9020024","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059255767","display_name":"Yutao Dou","orcid":"https://orcid.org/0000-0001-9990-690X"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["AU","CN"],"is_corresponding":true,"raw_author_name":"Yutao Dou","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University,Changsha,China,410082","Centre for Distributed and High Performance Computing, School of Computer Science, The University of Sydney, Darlington, NSW, Australia"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University,Changsha,China,410082","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Centre for Distributed and High Performance Computing, School of Computer Science, The University of Sydney, Darlington, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055460914","display_name":"Wei Li","orcid":"https://orcid.org/0000-0001-8446-5427"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["School of Computer Science, The University of Sydney,Centre for Distributed and High Performance Computing,Darlington,NSW,Australia,2008"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney,Centre for Distributed and High Performance Computing,Darlington,NSW,Australia,2008","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102606315","display_name":"Yangtao Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangtao Zheng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University,Changsha,China,410082"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University,Changsha,China,410082","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037785133","display_name":"Xiaojun Yao","orcid":"https://orcid.org/0000-0002-8974-0173"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Xiaojun Yao","raw_affiliation_strings":["Macao Polytechnic University,Faculty of Applied Sciences,Macao,China,999078"],"affiliations":[{"raw_affiliation_string":"Macao Polytechnic University,Faculty of Applied Sciences,Macao,China,999078","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054987508","display_name":"Huanxiang Liu","orcid":"https://orcid.org/0000-0002-9284-3667"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Huanxiang Liu","raw_affiliation_strings":["Macao Polytechnic University,Faculty of Applied Sciences,Macao,China,999078"],"affiliations":[{"raw_affiliation_string":"Macao Polytechnic University,Faculty of Applied Sciences,Macao,China,999078","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015993565","display_name":"Albert Y. Zomaya","orcid":"https://orcid.org/0000-0002-3090-1059"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Albert Y. Zomaya","raw_affiliation_strings":["School of Computer Science, The University of Sydney,Centre for Distributed and High Performance Computing,Darlington,NSW,Australia,2008"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney,Centre for Distributed and High Performance Computing,Darlington,NSW,Australia,2008","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108008219","display_name":"Shaoliang Peng","orcid":"https://orcid.org/0000-0002-4647-2615"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaoliang Peng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University,Changsha,China,410082"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University,Changsha,China,410082","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5059255767"],"corresponding_institution_ids":["https://openalex.org/I129604602","https://openalex.org/I16609230"],"apc_list":null,"apc_paid":null,"fwci":1.0396,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.78577812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"7","issue":"4","first_page":"1333","last_page":"1346"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10904","display_name":"Embedded Systems Design Techniques","score":0.9182000160217285,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10904","display_name":"Embedded Systems Design Techniques","score":0.9182000160217285,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.770729124546051},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7686387300491333},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6270343661308289},{"id":"https://openalex.org/keywords/automatic-parallelization","display_name":"Automatic parallelization","score":0.5672327876091003},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.4858967661857605},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32202276587486267},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1826920509338379},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08438432216644287},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.06101766228675842}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.770729124546051},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7686387300491333},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6270343661308289},{"id":"https://openalex.org/C164833996","wikidata":"https://www.wikidata.org/wiki/Q2323839","display_name":"Automatic parallelization","level":3,"score":0.5672327876091003},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.4858967661857605},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32202276587486267},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1826920509338379},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08438432216644287},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.06101766228675842},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2024.9020024","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020024","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:7dfb9423916f418c8347a5a435ec3bfe","is_oa":true,"landing_page_url":"https://doaj.org/article/7dfb9423916f418c8347a5a435ec3bfe","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 7, Iss 4, Pp 1333-1346 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2024.9020024","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020024","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7968958930","display_name":null,"funder_award_id":"62361166662","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G91410164","display_name":null,"funder_award_id":"2023YFC3503400,2022YFC3400400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2081612620","https://openalex.org/W2152825617","https://openalex.org/W2169713586","https://openalex.org/W2280404143","https://openalex.org/W2396881363","https://openalex.org/W2597505554","https://openalex.org/W2757504960","https://openalex.org/W2768146862","https://openalex.org/W2903272045","https://openalex.org/W2906479915","https://openalex.org/W2969225972","https://openalex.org/W2989085833","https://openalex.org/W2995282027","https://openalex.org/W3008012010","https://openalex.org/W3026593668","https://openalex.org/W3036613243","https://openalex.org/W3209229092","https://openalex.org/W3211148414","https://openalex.org/W4220881656","https://openalex.org/W4221024284","https://openalex.org/W4288083420","https://openalex.org/W4313439128","https://openalex.org/W4386397734","https://openalex.org/W4390992137","https://openalex.org/W6747768625","https://openalex.org/W6810196589"],"related_works":["https://openalex.org/W2555203579","https://openalex.org/W1842571235","https://openalex.org/W2994999011","https://openalex.org/W3024114208","https://openalex.org/W1985416522","https://openalex.org/W1819272977","https://openalex.org/W2911340114","https://openalex.org/W2034886984","https://openalex.org/W4233032676","https://openalex.org/W2158244147"],"abstract_inverted_index":{"Medical":[0],"big":[1],"data":[2,22,48,54,65,90,96,106,121],"with":[3],"artificial":[4],"intelligence":[5],"are":[6],"vital":[7],"in":[8,19],"advancing":[9],"digital":[10],"medicine.":[11],"However,":[12],"the":[13,95,101,104,119,123,130],"opaque":[14],"and":[15,29,74,89,99,126],"non-standardised":[16],"nature":[17],"embedded":[18],"most":[20],"medical":[21],"extraction":[23,49,55,97],"is":[24],"prone":[25],"to":[26,35,42,83],"batch":[27],"effects":[28],"has":[30],"become":[31],"a":[32,68,85],"significant":[33],"obstacle":[34],"reproducing":[36],"previous":[37],"works.":[38],"This":[39],"paper":[40],"aims":[41],"develop":[43],"an":[44],"easy-to-use":[45],"time-series":[46,69],"multimodal":[47],"pipeline,":[50],"Quick-MIMIC,":[51,84],"for":[52,93,133],"standardised":[53],"from":[56,122],"MIMIC":[57,124],"datasets.":[58],"Our":[59],"method":[60,88],"can":[61,116],"fully":[62],"integrate":[63],"different":[64],"structures":[66],"into":[67,129],"table,":[70],"including":[71],"structured,":[72],"semi-structured,":[73],"unstructured":[75],"data.":[76],"We":[77],"also":[78],"introduce":[79],"two":[80],"additional":[81],"modules":[82],"pipeline":[86,115],"parallelization":[87],"analysis":[91],"methods,":[92],"reducing":[94],"time":[98],"presenting":[100],"characteristics":[102],"of":[103],"extracted":[105],"intuitively.":[107],"The":[108],"extensive":[109],"experimental":[110],"results":[111],"show":[112],"that":[113],"our":[114],"efficiently":[117],"extract":[118],"needed":[120],"dataset":[125],"convert":[127],"it":[128],"correct":[131],"format":[132],"further":[134],"analytic":[135],"tasks.":[136]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
