{"id":"https://openalex.org/W4401942611","doi":"https://doi.org/10.26599/bdma.2024.9020002","title":"SGCL-LncLoc: An Interpretable Deep Learning Model for Improving IncRNA Subcellular Localization Prediction with Supervised Graph Contrastive Learning","display_name":"SGCL-LncLoc: An Interpretable Deep Learning Model for Improving IncRNA Subcellular Localization Prediction with Supervised Graph Contrastive Learning","publication_year":2024,"publication_date":"2024-08-28","ids":{"openalex":"https://openalex.org/W4401942611","doi":"https://doi.org/10.26599/bdma.2024.9020002"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2024.9020002","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020002","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.26599/bdma.2024.9020002","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056164457","display_name":"Baoying Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Baoying Zhao","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100346366","display_name":"Yiming Li","orcid":"https://orcid.org/0000-0003-4602-3905"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019845646","display_name":"Pingjian Ding","orcid":"https://orcid.org/0000-0002-2613-2496"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pingjian Ding","raw_affiliation_strings":["Case Western Reserve University,Center for Artificial Intelligence in Drug Discovery,Cleveland,OH,USA,44106"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve University,Center for Artificial Intelligence in Drug Discovery,Cleveland,OH,USA,44106","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077105641","display_name":"Rui Yin","orcid":"https://orcid.org/0000-0002-1403-0396"},"institutions":[{"id":"https://openalex.org/I1333939285","display_name":"Florida Department of Health","ror":"https://ror.org/03e1xkn26","country_code":"US","type":"government","lineage":["https://openalex.org/I1333939285"]},{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Yin","raw_affiliation_strings":["University of Florida,Department of Health Outcomes and Biomedical Informatics,Gainesville,FL,USA,32603"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida,Department of Health Outcomes and Biomedical Informatics,Gainesville,FL,USA,32603","institution_ids":["https://openalex.org/I2800717037","https://openalex.org/I1333939285"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025341442","display_name":"Shichao Kan","orcid":"https://orcid.org/0000-0003-0097-6196"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shichao Kan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100719013"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":4.6359,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.95699695,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"7","issue":"3","first_page":"765","last_page":"780"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9646000266075134,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9531999826431274,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7280254364013672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6219181418418884},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5245078802108765},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.516019344329834},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5030550360679626},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4354407787322998},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33933722972869873},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.09457647800445557}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7280254364013672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6219181418418884},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5245078802108765},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.516019344329834},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5030550360679626},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4354407787322998},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33933722972869873},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.09457647800445557}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2024.9020002","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020002","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:422169b76ccb4e3a9369e1499a6aa3ee","is_oa":true,"landing_page_url":"https://doaj.org/article/422169b76ccb4e3a9369e1499a6aa3ee","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 7, Iss 3, Pp 765-780 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2024.9020002","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020002","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1579646641","display_name":null,"funder_award_id":"CX20230271","funder_id":"https://openalex.org/F4320335880","funder_display_name":"Fundamental Research Funds for Central Universities of the Central South University"},{"id":"https://openalex.org/G6490360016","display_name":null,"funder_award_id":"62102457","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335880","display_name":"Fundamental Research Funds for Central Universities of the Central South University","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W2024241876","https://openalex.org/W2050982262","https://openalex.org/W2085220756","https://openalex.org/W2090227993","https://openalex.org/W2097606916","https://openalex.org/W2134033103","https://openalex.org/W2134625814","https://openalex.org/W2146573461","https://openalex.org/W2157009395","https://openalex.org/W2198153867","https://openalex.org/W2508362099","https://openalex.org/W2593488635","https://openalex.org/W2754846502","https://openalex.org/W2765281581","https://openalex.org/W2789926271","https://openalex.org/W2808950870","https://openalex.org/W2899322113","https://openalex.org/W2949674037","https://openalex.org/W2949676527","https://openalex.org/W2953177586","https://openalex.org/W3006475160","https://openalex.org/W3014726572","https://openalex.org/W3020929333","https://openalex.org/W3039101105","https://openalex.org/W3089631827","https://openalex.org/W3103443653","https://openalex.org/W3116796646","https://openalex.org/W3131932009","https://openalex.org/W3175005398","https://openalex.org/W3185027018","https://openalex.org/W3198604700","https://openalex.org/W3199924206","https://openalex.org/W4205653843","https://openalex.org/W4220788456","https://openalex.org/W4225665842","https://openalex.org/W4226204352","https://openalex.org/W4283580105","https://openalex.org/W4283802608","https://openalex.org/W4287812705","https://openalex.org/W4308769272","https://openalex.org/W4310594072","https://openalex.org/W4310665480","https://openalex.org/W4312094581","https://openalex.org/W4317934282","https://openalex.org/W4318323787","https://openalex.org/W4389925851","https://openalex.org/W4392172616","https://openalex.org/W4392172738","https://openalex.org/W6776700526"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W4230611425","https://openalex.org/W2731899572","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W2804383999","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Understanding":[0],"the":[1,32,47,74,79,83,93,105,109,113,118,141,150],"subcellular":[2,26,179,198],"localization":[3,180],"of":[4,29,82,108,115],"long":[5],"non-coding":[6],"RNAs":[7],"(IncRNAs)":[8],"is":[9,204],"crucial":[10],"for":[11,156,176],"unraveling":[12],"their":[13],"functional":[14],"mechanisms.":[15],"While":[16],"previous":[17],"computational":[18,101],"methods":[19],"have":[20],"made":[21],"progress":[22],"in":[23,117],"predicting":[24],"IncRNA":[25,44,66,119,178,197],"localization,":[27],"most":[28],"them":[30],"ignore":[31],"sequence":[33],"order":[34],"information":[35],"by":[36],"relying":[37],"on":[38,59],"k-mer":[39],"frequency":[40],"features":[41],"to":[42,77,91,103,112,123,152],"encode":[43],"sequences.":[45],"In":[46],"study,":[48],"we":[49,98,183],"develope":[50],"SGCL-LncLoc,":[51],"a":[52,100,134,185],"novel":[53],"interpretable":[54,127],"deep":[55,128,166],"learning":[56,129,137,155,167],"model":[57,151],"based":[58],"supervised":[60,135],"graph":[61,88,95,110],"contrastive":[62,136],"learning.":[63],"SGCL-LncLoc":[64,86,122,132,163,190,201],"transforms":[65],"sequences":[67],"into":[68],"de":[69],"Bruijn":[70],"graphs":[71],"and":[72,146,170],"uses":[73],"Word2Vec":[75],"technique":[76],"learn":[78,92],"node":[80],"representation":[81,154],"graph.":[84],"Then,":[85],"applies":[87],"convolutional":[89],"networks":[90],"comprehensive":[94],"representation.":[96],"Additionally,":[97],"propose":[99],"method":[102],"map":[104],"attention":[106],"weights":[107,114],"nodes":[111],"nucleotides":[116],"sequence,":[120],"allowing":[121],"serve":[124],"as":[125],"an":[126],"model.":[130],"Furthermore,":[131,182],"employs":[133],"strategy,":[138],"which":[139],"leverages":[140],"relationships":[142],"between":[143],"different":[144],"samples":[145],"label":[147],"information,":[148],"guiding":[149],"enhance":[153],"IncRNAs.":[157],"Extensive":[158],"experimental":[159],"results":[160],"demonstrate":[161],"that":[162,189],"outperforms":[164],"both":[165],"baseline":[168],"models":[169],"existing":[171],"predictors,":[172],"showing":[173],"its":[174],"capability":[175],"accurate":[177],"prediction.":[181],"conduct":[184],"motif":[186],"analysis,":[187],"revealing":[188],"successfully":[191],"captures":[192],"known":[193],"motifs":[194],"associated":[195],"with":[196],"localization.":[199],"The":[200,208],"web":[202],"server":[203],"available":[205],"at":[206],"http://csuligroup.com:8000/SGCL-LncLoc.":[207],"source":[209],"code":[210],"can":[211],"be":[212],"obtained":[213],"from":[214],"https://github.com/CSUBioGroup/SGCL-LncLoc.":[215]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
