{"id":"https://openalex.org/W7128305076","doi":"https://doi.org/10.26599/bdma.2025.9020086","title":"Towards Artificial Intelligence for Science: A Case Study of Using ChatGPT for Disease Causality Discovery from Biomedical Literature","display_name":"Towards Artificial Intelligence for Science: A Case Study of Using ChatGPT for Disease Causality Discovery from Biomedical Literature","publication_year":2026,"publication_date":"2026-02-06","ids":{"openalex":"https://openalex.org/W7128305076","doi":"https://doi.org/10.26599/bdma.2025.9020086"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2025.9020086","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2025.9020086","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654","2097-406X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.26599/bdma.2025.9020086","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Xiaoying Li","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoying Li","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences,Beijing,China,100020"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences,Beijing,China,100020","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125352511","display_name":"Jinhua Du","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinhua Du","raw_affiliation_strings":["Tsinghua University,Department of Computer Science and Technology,Beijing,China,100084"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tsinghua University,Department of Computer Science and Technology,Beijing,China,100084","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109785025","display_name":"Yuyang Liu","orcid":"https://orcid.org/0009-0006-3760-8230"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuyang Liu","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences,Beijing,China,100020"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences,Beijing,China,100020","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100917169","display_name":"Hao Yin","orcid":"https://orcid.org/0009-0008-5127-5764"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Yin","raw_affiliation_strings":["Beijing National Research Center for Information Science and Technology, Tsinghua University,Beijing,China,100084"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing National Research Center for Information Science and Technology, Tsinghua University,Beijing,China,100084","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5125364648","display_name":"Hui Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Liu","raw_affiliation_strings":["Institute of Medical Information, Chinese Academy of Medical Sciences,Beijing,China,100020"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences,Beijing,China,100020","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.9847,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.92268253,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"9","issue":"2","first_page":"554","last_page":"562"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.7172999978065491,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.7172999978065491,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.08760000020265579,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.03519999980926514,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/causality","display_name":"Causality (physics)","score":0.5123000144958496},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.36250001192092896},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.32249999046325684},{"id":"https://openalex.org/keywords/systematic-review","display_name":"Systematic review","score":0.3109999895095825}],"concepts":[{"id":"https://openalex.org/C64357122","wikidata":"https://www.wikidata.org/wiki/Q1149766","display_name":"Causality (physics)","level":2,"score":0.5123000144958496},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4668000042438507},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4530999958515167},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.36250001192092896},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.32249999046325684},{"id":"https://openalex.org/C189708586","wikidata":"https://www.wikidata.org/wiki/Q1504425","display_name":"Systematic review","level":3,"score":0.3109999895095825},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.31040000915527344},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.29660001397132874},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2833000123500824},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.27489998936653137},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.26669999957084656}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2025.9020086","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2025.9020086","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654","2097-406X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:2d4fb610b19d43c2a9d96fe2e125c03f","is_oa":true,"landing_page_url":"https://doaj.org/article/2d4fb610b19d43c2a9d96fe2e125c03f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 9, Iss 2, Pp 554-562 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2025.9020086","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2025.9020086","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654","2097-406X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8302845582","display_name":null,"funder_award_id":"2024-ZHCH630-01","funder_id":"https://openalex.org/F4320323137","funder_display_name":"Chinese Academy of Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320323137","display_name":"Chinese Academy of Medical Sciences","ror":"https://ror.org/03cve4549"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1976291885","https://openalex.org/W2334487059","https://openalex.org/W2947596730","https://openalex.org/W2953703974","https://openalex.org/W2967166693","https://openalex.org/W3003588990","https://openalex.org/W3035216733","https://openalex.org/W3120008461","https://openalex.org/W4379598302","https://openalex.org/W4384561707","https://openalex.org/W4385487253","https://openalex.org/W4386158333","https://openalex.org/W4386867830","https://openalex.org/W4387381389","https://openalex.org/W4388753652","https://openalex.org/W4389202100","https://openalex.org/W4391398993","https://openalex.org/W4393287322","https://openalex.org/W4401729352"],"related_works":[],"abstract_inverted_index":{"Generative":[0],"artificial":[1],"intelligence":[2],"(GAI)":[3],"has":[4,160],"garnered":[5],"considerable":[6],"attention":[7],"from":[8,58,104],"the":[9,27,37,69,75,84,145,151,161,171,178,209,216],"scientific":[10,18],"community":[11],"and":[12,89,123,148,192,211],"driven":[13],"a":[14,51,105,138,200],"paradigm":[15],"shift":[16],"in":[17,31,74,80,101,135],"research,":[19,33],"namely":[20,120],"AI":[21],"for":[22,144,150,199],"science":[23],"(AI4S).":[24],"To":[25],"evaluate":[26],"potential":[28],"of":[29,39,68,108,116,137,141,202,213,219],"GAI":[30],"biomedical":[32,47,60,76,165,175,194,220],"this":[34,81,206],"study":[35,53],"explores":[36],"capability":[38,172],"using":[40,62],"large":[41],"language":[42],"models":[43],"(LLMs)":[44],"to":[45,54,132,163,173],"discover":[46,164],"knowledge":[48,73,166,217],"by":[49,112],"conducting":[50],"case":[52],"extract":[55],"disease":[56],"causalities":[57,85,103],"large-scale":[59],"literature":[61],"ChatGPT.":[63],"In":[64,177],"particular,":[65],"two":[66],"groups":[67],"most":[70],"frequent":[71],"causal":[72],"domain":[77],"are":[78,96,129],"discussed":[79],"study,":[82],"especially":[83,215],"among":[86],"different":[87],"diseases":[88],"chemically":[90],"induced":[91],"causations.":[92],"Quantitatively,":[93],"ChatGPT\u2019s":[94,127],"responses":[95],"compared":[97],"with":[98],"biocurators\u2019":[99],"annotations":[100,134],"identifying":[102],"random":[106],"sampling":[107],"PubMed":[109],"citations.":[110],"Guided":[111],"six":[113],"predefined":[114],"prompts":[115],"three":[117],"mainstream":[118],"paradigms,":[119],"zero-shot,":[121],"few-shot,":[122],"long":[124],"chain-of-thought":[125],"(CoT),":[126],"results":[128],"very":[130],"close":[131],"human":[133],"terms":[136],"high":[139],"degree":[140],"precision":[142],"(94.73%":[143],"disease-disease":[146],"group":[147,153],"92.47%":[149],"chemical-disease":[152],"individually).":[154],"These":[155],"findings":[156],"suggest":[157],"that":[158],"ChatGPT":[159],"capacity":[162],"efficiently,":[167],"as":[168,170,188],"well":[169],"facilitate":[174],"research.":[176,221],"near":[179],"future,":[180],"more":[181,184,193],"state-of-the-art":[182],"LLMs,":[183],"real-world":[185],"data,":[186],"such":[187],"electronic":[189],"medical":[190],"records,":[191],"tasks":[195],"will":[196],"be":[197],"pursued":[198],"series":[201],"holistic":[203],"studies.":[204],"Overall,":[205],"work":[207],"supports":[208],"vision":[210],"development":[212],"AI4S,":[214],"discovery":[218]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-02-09T06:03:36.439944","created_date":"2026-02-09T00:00:00"}
