{"id":"https://openalex.org/W4412404067","doi":"https://doi.org/10.26599/bdma.2025.9020010","title":"A Comparative Study of Sequence Clustering Algorithms","display_name":"A Comparative Study of Sequence Clustering Algorithms","publication_year":2025,"publication_date":"2025-07-14","ids":{"openalex":"https://openalex.org/W4412404067","doi":"https://doi.org/10.26599/bdma.2025.9020010"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2025.9020010","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2025.9020010","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654","2097-406X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.26599/bdma.2025.9020010","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062830066","display_name":"Zhen Ju","orcid":"https://orcid.org/0000-0001-7720-1570"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Ju","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100700892","display_name":"Huiling Zhang","orcid":"https://orcid.org/0000-0002-7856-2703"},"institutions":[{"id":"https://openalex.org/I101479585","display_name":"South China Agricultural University","ror":"https://ror.org/05v9jqt67","country_code":"CN","type":"education","lineage":["https://openalex.org/I101479585"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiling Zhang","raw_affiliation_strings":["College of Mathematics and Information, South China Agricultural University,Guangzhou,China,510642"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Mathematics and Information, South China Agricultural University,Guangzhou,China,510642","institution_ids":["https://openalex.org/I101479585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119272032","display_name":"Jingjing Zhang","orcid":"https://orcid.org/0000-0002-9884-4230"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Zhang","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065853944","display_name":"Wenhui Xi","orcid":"https://orcid.org/0000-0003-4272-7518"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhui Xi","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035395017","display_name":"Dian Huang","orcid":"https://orcid.org/0000-0002-7853-1747"},"institutions":[{"id":"https://openalex.org/I4210142539","display_name":"Guangdong Institute of Intelligent Manufacturing","ror":"https://ror.org/049jpjz09","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210142539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dian Huang","raw_affiliation_strings":["Guangdong Institute of Intelligence Science and Technology,Lab of High Performance Intelligent Computing,Zhuhai,China,519031"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong Institute of Intelligence Science and Technology,Lab of High Performance Intelligent Computing,Zhuhai,China,519031","institution_ids":["https://openalex.org/I4210142539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101952645","display_name":"Shengzhong Feng","orcid":"https://orcid.org/0000-0002-6225-2815"},"institutions":[{"id":"https://openalex.org/I4210142539","display_name":"Guangdong Institute of Intelligent Manufacturing","ror":"https://ror.org/049jpjz09","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210142539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengzhong Feng","raw_affiliation_strings":["Guangdong Institute of Intelligence Science and Technology,Lab of High Performance Intelligent Computing,Zhuhai,China,519031"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong Institute of Intelligence Science and Technology,Lab of High Performance Intelligent Computing,Zhuhai,China,519031","institution_ids":["https://openalex.org/I4210142539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056275783","display_name":"Jintao Meng","orcid":"https://orcid.org/0000-0002-6208-4102"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jintao Meng","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences,Shenzhen,China,518005","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037823825","display_name":"Yanjie Wei","orcid":"https://orcid.org/0000-0002-4791-7540"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanjie Wei","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology,Shenzhen Key Laboratory of Intelligent Bioinformatics,Shenzhen,China,518055"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology,Shenzhen Key Laboratory of Intelligent Bioinformatics,Shenzhen,China,518055","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I4210145761"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6953,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.83955613,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"8","issue":"5","first_page":"1011","last_page":"1022"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6362019181251526},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6350774765014648},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5314311981201172},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5216041803359985},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2881833612918854},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07837182283401489}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6362019181251526},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6350774765014648},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5314311981201172},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5216041803359985},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2881833612918854},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07837182283401489},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2025.9020010","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2025.9020010","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654","2097-406X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:e258a10611124873a722b034569eb7f1","is_oa":true,"landing_page_url":"https://doaj.org/article/e258a10611124873a722b034569eb7f1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 8, Iss 5, Pp 1011-1022 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2025.9020010","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2025.9020010","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654","2097-406X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4009424769","display_name":null,"funder_award_id":"62272449","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8892299163","display_name":null,"funder_award_id":"2023YFF1206103","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1983100435","https://openalex.org/W2016060560","https://openalex.org/W2081930221","https://openalex.org/W2118526609","https://openalex.org/W2124351063","https://openalex.org/W2147526198","https://openalex.org/W2170747616","https://openalex.org/W2396849069","https://openalex.org/W2513506562","https://openalex.org/W2912857220","https://openalex.org/W2953008890","https://openalex.org/W2999958350","https://openalex.org/W3081228941","https://openalex.org/W3123243594","https://openalex.org/W3143063265","https://openalex.org/W3211364589","https://openalex.org/W4200046412","https://openalex.org/W4252166161","https://openalex.org/W4280645315","https://openalex.org/W4281753295","https://openalex.org/W4281812964","https://openalex.org/W4307843054","https://openalex.org/W4308834638","https://openalex.org/W4394581382"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":{"Sequence":[0,65],"clustering":[1,71],"software":[2],"is":[3],"essential":[4],"in":[5,32,96],"bioinformatics.":[6],"However,":[7],"selecting":[8],"the":[9,49,62],"appropriate":[10],"one":[11],"can":[12],"be":[13],"challenging":[14],"due":[15],"to":[16],"its":[17],"diverse":[18],"algorithms":[19],"and":[20,26,42,59,67,74,85,94],"targeted":[21],"applications.":[22],"This":[23],"paper":[24,47],"analyzes":[25],"evaluates":[27],"eight":[28],"representative":[29],"softwares":[30],"(algorithms)":[31],"terms":[33],"of":[34,39,51,83],"precision,":[35],"sensitivity,":[36],"speed,":[37],"scale":[38],"running":[40],"time,":[41],"memory":[43,75],"consumption.":[44],"Furthermore,":[45],"this":[46],"examines":[48],"effects":[50,87],"sequence":[52,54],"count,":[53,58],"length,":[55],"identity,":[56],"thread":[57],"GPU":[60],"on":[61],"above":[63],"aspects.":[64],"length":[66],"identity":[68],"significantly":[69],"impact":[70],"efficiency":[72],"(speed":[73],"consumption),":[76],"with":[77],"fluctuation":[78],"amplitudes":[79],"exceeding":[80],"an":[81],"order":[82],"magnitude":[84],"non-monotonic":[86],"observed.":[88],"The":[89],"evaluation":[90],"results":[91],"are":[92],"analyzed":[93],"summarized":[95],"tables":[97],"for":[98],"users'":[99],"reference.":[100]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
