{"id":"https://openalex.org/W4401942503","doi":"https://doi.org/10.26599/bdma.2024.9020028","title":"Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey","display_name":"Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey","publication_year":2024,"publication_date":"2024-08-28","ids":{"openalex":"https://openalex.org/W4401942503","doi":"https://doi.org/10.26599/bdma.2024.9020028"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2024.9020028","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020028","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.26599/bdma.2024.9020028","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104157292","display_name":"Taojie Kuang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Taojie Kuang","raw_affiliation_strings":["Peng Cheng National Laboratory,Shenzhen,China,518000"],"affiliations":[{"raw_affiliation_string":"Peng Cheng National Laboratory,Shenzhen,China,518000","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100355019","display_name":"Pengfei Liu","orcid":"https://orcid.org/0000-0003-1510-0621"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengfei Liu","raw_affiliation_strings":["Peng Cheng National Laboratory,Shenzhen,China,518000"],"affiliations":[{"raw_affiliation_string":"Peng Cheng National Laboratory,Shenzhen,China,518000","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070028902","display_name":"Zhixiang Ren","orcid":"https://orcid.org/0000-0002-4104-3790"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixiang Ren","raw_affiliation_strings":["Peng Cheng National Laboratory,Shenzhen,China,518000"],"affiliations":[{"raw_affiliation_string":"Peng Cheng National Laboratory,Shenzhen,China,518000","institution_ids":["https://openalex.org/I4210136793"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5104157292"],"corresponding_institution_ids":["https://openalex.org/I4210136793"],"apc_list":null,"apc_paid":null,"fwci":4.9974,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.95965687,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"7","issue":"3","first_page":"858","last_page":"888"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.6415225863456726},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.5891823172569275},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5285148620605469},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5010380744934082},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39568546414375305},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32577669620513916},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18310511112213135},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.12044313549995422},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.09125074744224548}],"concepts":[{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.6415225863456726},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.5891823172569275},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5285148620605469},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5010380744934082},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39568546414375305},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32577669620513916},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18310511112213135},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.12044313549995422},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.09125074744224548},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2024.9020028","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020028","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:4870300b0bb944759a1a547071cce1b1","is_oa":true,"landing_page_url":"https://doaj.org/article/4870300b0bb944759a1a547071cce1b1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 7, Iss 3, Pp 858-888 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2024.9020028","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020028","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":222,"referenced_works":["https://openalex.org/W1508604947","https://openalex.org/W1975147762","https://openalex.org/W1988037271","https://openalex.org/W1991286793","https://openalex.org/W1999638776","https://openalex.org/W2022476850","https://openalex.org/W2038702914","https://openalex.org/W2060531713","https://openalex.org/W2138621090","https://openalex.org/W2200017991","https://openalex.org/W2251189452","https://openalex.org/W2585152223","https://openalex.org/W2594183968","https://openalex.org/W2602318385","https://openalex.org/W2789074794","https://openalex.org/W2797884766","https://openalex.org/W2810023675","https://openalex.org/W2906755148","https://openalex.org/W2913099012","https://openalex.org/W2957746479","https://openalex.org/W2962711740","https://openalex.org/W2962876364","https://openalex.org/W2963295149","https://openalex.org/W2964185501","https://openalex.org/W2966357564","https://openalex.org/W2968734407","https://openalex.org/W2969457089","https://openalex.org/W2973114758","https://openalex.org/W2984339599","https://openalex.org/W3000478925","https://openalex.org/W3005552578","https://openalex.org/W3006477052","https://openalex.org/W3007488165","https://openalex.org/W3009321976","https://openalex.org/W3032963903","https://openalex.org/W3034231628","https://openalex.org/W3034516664","https://openalex.org/W3035524453","https://openalex.org/W3035664258","https://openalex.org/W3036535673","https://openalex.org/W3036737467","https://openalex.org/W3036993656","https://openalex.org/W3038823641","https://openalex.org/W3041085747","https://openalex.org/W3042313988","https://openalex.org/W3042448193","https://openalex.org/W3045928028","https://openalex.org/W3093934881","https://openalex.org/W3094060150","https://openalex.org/W3095319910","https://openalex.org/W3095617312","https://openalex.org/W3096163555","https://openalex.org/W3098465726","https://openalex.org/W3120618935","https://openalex.org/W3122618795","https://openalex.org/W3126679164","https://openalex.org/W3127609309","https://openalex.org/W3129168016","https://openalex.org/W3130274530","https://openalex.org/W3134146005","https://openalex.org/W3145004415","https://openalex.org/W3153418077","https://openalex.org/W3156823866","https://openalex.org/W3157265962","https://openalex.org/W3165369424","https://openalex.org/W3166272013","https://openalex.org/W3166597321","https://openalex.org/W3169827396","https://openalex.org/W3171007011","https://openalex.org/W3185645213","https://openalex.org/W3185727444","https://openalex.org/W3185883045","https://openalex.org/W3192436896","https://openalex.org/W3193501747","https://openalex.org/W3194292290","https://openalex.org/W3195415198","https://openalex.org/W3196214900","https://openalex.org/W3204651332","https://openalex.org/W3205158828","https://openalex.org/W3205320077","https://openalex.org/W3206711231","https://openalex.org/W3211477647","https://openalex.org/W3215452784","https://openalex.org/W4200432496","https://openalex.org/W4205335788","https://openalex.org/W4210416489","https://openalex.org/W4212837331","https://openalex.org/W4213077304","https://openalex.org/W4214868967","https://openalex.org/W4220980941","https://openalex.org/W4221151574","https://openalex.org/W4224220091","https://openalex.org/W4226016740","https://openalex.org/W4226142447","https://openalex.org/W4226159083","https://openalex.org/W4280602833","https://openalex.org/W4281388820","https://openalex.org/W4281808067","https://openalex.org/W4282017563","https://openalex.org/W4282913028","https://openalex.org/W4283727985","https://openalex.org/W4284893771","https://openalex.org/W4286909196","https://openalex.org/W4287027946","https://openalex.org/W4287126984","https://openalex.org/W4287586570","https://openalex.org/W4288275971","https://openalex.org/W4288421327","https://openalex.org/W4290875097","https://openalex.org/W4293105114","https://openalex.org/W4293821372","https://openalex.org/W4295846611","https://openalex.org/W4296262915","https://openalex.org/W4297179162","https://openalex.org/W4297632148","https://openalex.org/W4297949515","https://openalex.org/W4298111667","https://openalex.org/W4301372551","https://openalex.org/W4306317286","https://openalex.org/W4306317320","https://openalex.org/W4306317971","https://openalex.org/W4307493889","https://openalex.org/W4309218736","https://openalex.org/W4310413874","https://openalex.org/W4310482569","https://openalex.org/W4310603653","https://openalex.org/W4310878883","https://openalex.org/W4311584330","https://openalex.org/W4312129726","https://openalex.org/W4312261056","https://openalex.org/W4312632987","https://openalex.org/W4312743169","https://openalex.org/W4313423841","https://openalex.org/W4313485929","https://openalex.org/W4313525552","https://openalex.org/W4313525610","https://openalex.org/W4313525845","https://openalex.org/W4313526690","https://openalex.org/W4313530695","https://openalex.org/W4318563495","https://openalex.org/W4320525813","https://openalex.org/W4321227311","https://openalex.org/W4323338513","https://openalex.org/W4323833122","https://openalex.org/W4361247736","https://openalex.org/W4362520745","https://openalex.org/W4364382868","https://openalex.org/W4365397996","https://openalex.org/W4365455552","https://openalex.org/W4366587646","https://openalex.org/W4367172783","https://openalex.org/W4368755154","https://openalex.org/W4372330430","https://openalex.org/W4378195015","https://openalex.org/W4379184641","https://openalex.org/W4379879032","https://openalex.org/W4380715275","https://openalex.org/W4381679608","https://openalex.org/W4382203404","https://openalex.org/W4382239609","https://openalex.org/W4382458099","https://openalex.org/W4382469015","https://openalex.org/W4384918821","https://openalex.org/W4385189160","https://openalex.org/W4385567824","https://openalex.org/W4385568380","https://openalex.org/W4385764380","https://openalex.org/W4385767706","https://openalex.org/W4385767935","https://openalex.org/W4385969371","https://openalex.org/W4386012079","https://openalex.org/W4386046779","https://openalex.org/W4386862116","https://openalex.org/W4387701207","https://openalex.org/W4387790076","https://openalex.org/W4388845139","https://openalex.org/W4388979610","https://openalex.org/W4389888290","https://openalex.org/W4391345293","https://openalex.org/W4391541076","https://openalex.org/W4399884408","https://openalex.org/W6638824847","https://openalex.org/W6733814495","https://openalex.org/W6751420435","https://openalex.org/W6754929296","https://openalex.org/W6762913911","https://openalex.org/W6766156693","https://openalex.org/W6772452955","https://openalex.org/W6774009640","https://openalex.org/W6776488958","https://openalex.org/W6778953688","https://openalex.org/W6779789776","https://openalex.org/W6780180721","https://openalex.org/W6780444311","https://openalex.org/W6780471435","https://openalex.org/W6784526300","https://openalex.org/W6784614190","https://openalex.org/W6784694379","https://openalex.org/W6789134902","https://openalex.org/W6789810805","https://openalex.org/W6795756934","https://openalex.org/W6801817941","https://openalex.org/W6803136014","https://openalex.org/W6803565034","https://openalex.org/W6803921755","https://openalex.org/W6810511533","https://openalex.org/W6838629361","https://openalex.org/W6838894335","https://openalex.org/W6838920337","https://openalex.org/W6839448375","https://openalex.org/W6840001741","https://openalex.org/W6841414473","https://openalex.org/W6842368577","https://openalex.org/W6843615466","https://openalex.org/W6846825722","https://openalex.org/W6847417745","https://openalex.org/W6851073391","https://openalex.org/W6851923270","https://openalex.org/W6852533563","https://openalex.org/W6854587362","https://openalex.org/W6855271816","https://openalex.org/W6855707397"],"related_works":["https://openalex.org/W2385859805","https://openalex.org/W2530972254","https://openalex.org/W2374013449","https://openalex.org/W73545470","https://openalex.org/W2364381299","https://openalex.org/W2374430585","https://openalex.org/W3144423903","https://openalex.org/W2377397762","https://openalex.org/W2793967660","https://openalex.org/W2361654993"],"abstract_inverted_index":{"The":[0,20,190],"precise":[1,72],"prediction":[2,63],"of":[3,23,54,60],"molecular":[4,44,61,101],"properties":[5],"is":[6],"essential":[7],"for":[8,109,165,183,197],"advancements":[9,199],"in":[10,14,32,121,200],"drug":[11,201],"development,":[12],"particularly":[13],"virtual":[15],"screening":[16],"and":[17,41,64,86,112,172],"compound":[18],"optimization.":[19],"recent":[21,89],"introduction":[22],"numerous":[24],"deep":[25,90],"learningbased":[26],"methods":[27,92],"has":[28],"shown":[29],"remarkable":[30],"potential":[31],"enhancing":[33],"Molecular":[34,105],"Property":[35,106],"Prediction":[36,107],"(MPP),":[37],"especially":[38],"improving":[39],"accuracy":[40,59],"insights":[42,193],"into":[43],"structures.":[45],"Yet,":[46],"two":[47,191],"critical":[48],"questions":[49],"arise:":[50],"does":[51,65],"the":[52,58,136,139],"integration":[53],"domain":[55],"knowledge":[56],"augment":[57],"property":[62],"employing":[66],"multi-modal":[67,180],"data":[68,76],"fusion":[69],"yield":[70],"more":[71],"results":[73],"than":[74],"unique":[75],"source":[77],"methods?":[78],"To":[79],"explore":[80],"these":[81],"matters,":[82],"we":[83,150],"comprehensively":[84],"review":[85],"quantitatively":[87],"analyze":[88],"learning":[91,181],"based":[93],"on":[94],"various":[95],"benchmarks.":[96],"We":[97],"discover":[98,151],"that":[99],"integrating":[100],"information":[102,162],"significantly":[103],"improves":[104,163],"(MPP)":[108],"both":[110],"regression":[111,116,184],"classification":[113,132,166],"tasks.":[114],"Specifically,":[115],"improvements,":[117],"measured":[118,134,154],"by":[119,135,155,168,186],"reductions":[120],"Root":[122],"Mean":[123],"Square":[124],"Error":[125],"(RMSE),":[126],"are":[127,145],"up":[128,146,169,187],"to":[129,147,170,188],"4.0%,":[130],"while":[131],"enhancements,":[133],"area":[137],"under":[138],"receiver":[140],"operating":[141],"characteristic":[142],"curve":[143],"(ROC-AUC),":[144],"1.7%.":[148],"Additionally,":[149],"that,":[152],"as":[153],"ROC-AUC,":[156],"augmenting":[157],"2D":[158,174],"graphs":[159,175],"with":[160,176],"3D":[161],"performance":[164,182],"tasks":[167,185],"13.2%":[171],"enriching":[173],"1D":[177],"SMILES":[178],"boosts":[179],"9.1%.":[189],"consolidated":[192],"offer":[194],"crucial":[195],"guidance":[196],"future":[198],"discovery.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11}],"updated_date":"2026-04-07T14:57:38.498316","created_date":"2025-10-10T00:00:00"}
