{"id":"https://openalex.org/W4401979947","doi":"https://doi.org/10.26599/bdma.2024.9020006","title":"DMSS: An Attention-Based Deep Learning Model for High-Quality Mass Spectrometry Prediction","display_name":"DMSS: An Attention-Based Deep Learning Model for High-Quality Mass Spectrometry Prediction","publication_year":2024,"publication_date":"2024-08-28","ids":{"openalex":"https://openalex.org/W4401979947","doi":"https://doi.org/10.26599/bdma.2024.9020006"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2024.9020006","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020006","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.26599/bdma.2024.9020006","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102791450","display_name":"Yihui Ren","orcid":"https://orcid.org/0009-0008-8620-8481"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yihui Ren","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115595839","display_name":"Yu Wang","orcid":"https://orcid.org/0000-0002-2429-7027"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu Wang","raw_affiliation_strings":["Syneron Technology,Guangzhou,China,510000"],"affiliations":[{"raw_affiliation_string":"Syneron Technology,Guangzhou,China,510000","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023056274","display_name":"Wenkai Han","orcid":"https://orcid.org/0000-0002-1433-7697"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Wenkai Han","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST),Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division,Thuwal,Kingdom of Saudi Arabia,23955\u20136900"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST),Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division,Thuwal,Kingdom of Saudi Arabia,23955\u20136900","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038430444","display_name":"Yikang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I52158045","display_name":"China Agricultural University","ror":"https://ror.org/04v3ywz14","country_code":"CN","type":"education","lineage":["https://openalex.org/I52158045"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yikang Huang","raw_affiliation_strings":["College of Information and Electrical Engineering, China Agricultural University,Beijing,China,100083"],"affiliations":[{"raw_affiliation_string":"College of Information and Electrical Engineering, China Agricultural University,Beijing,China,100083","institution_ids":["https://openalex.org/I52158045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115597020","display_name":"Xiaoyang Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyang Hou","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102005126","display_name":"Chunming Zhang","orcid":"https://orcid.org/0000-0001-7871-6170"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunming Zhang","raw_affiliation_strings":["Insitute of Computing Technology, Chinese Academy of Sciences,Beijing,China,100190"],"affiliations":[{"raw_affiliation_string":"Insitute of Computing Technology, Chinese Academy of Sciences,Beijing,China,100190","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076729236","display_name":"Dongbo Bu","orcid":"https://orcid.org/0000-0003-4119-4238"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongbo Bu","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST),Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division,Thuwal,Kingdom of Saudi Arabia,23955\u20136900"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST),Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division,Thuwal,Kingdom of Saudi Arabia,23955\u20136900","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108903761","display_name":"Shiwei Sun","orcid":"https://orcid.org/0000-0002-0351-3720"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiwei Sun","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences,Key Lab of Intelligent Information Processing,Beijing,China,100190","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5102791450"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"],"apc_list":null,"apc_paid":null,"fwci":1.7944,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.85068894,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"7","issue":"3","first_page":"577","last_page":"589"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5935876369476318},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.47877323627471924},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44804465770721436},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.43349215388298035},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3999755084514618},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.39488303661346436},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.236532062292099},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.18071049451828003},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12881633639335632}],"concepts":[{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5935876369476318},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.47877323627471924},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44804465770721436},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.43349215388298035},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3999755084514618},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.39488303661346436},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.236532062292099},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.18071049451828003},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12881633639335632},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2024.9020006","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020006","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:a690b177a7674de7b78e3c137ad34645","is_oa":true,"landing_page_url":"https://doaj.org/article/a690b177a7674de7b78e3c137ad34645","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 7, Iss 3, Pp 577-589 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2024.9020006","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2024.9020006","pdf_url":null,"source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2901075103","display_name":null,"funder_award_id":"62072435,82130055,32271297,32370657","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G975092767","display_name":null,"funder_award_id":"2020YFA0907000","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1635348144","https://openalex.org/W1924770834","https://openalex.org/W1981098361","https://openalex.org/W1981593008","https://openalex.org/W1988667155","https://openalex.org/W2017064873","https://openalex.org/W2023096047","https://openalex.org/W2026465178","https://openalex.org/W2036321220","https://openalex.org/W2064675550","https://openalex.org/W2078598194","https://openalex.org/W2079843936","https://openalex.org/W2090960505","https://openalex.org/W2107710616","https://openalex.org/W2111115926","https://openalex.org/W2122723562","https://openalex.org/W2154222508","https://openalex.org/W2163827634","https://openalex.org/W2580819151","https://openalex.org/W2624356059","https://openalex.org/W2768087917","https://openalex.org/W2799323124","https://openalex.org/W2896457183","https://openalex.org/W2919115771","https://openalex.org/W2944851425","https://openalex.org/W2947763854","https://openalex.org/W2955390348","https://openalex.org/W3094502228","https://openalex.org/W3138516171","https://openalex.org/W3167897985","https://openalex.org/W3213043847","https://openalex.org/W4223457547","https://openalex.org/W4292779060","https://openalex.org/W4293237983","https://openalex.org/W4385245566","https://openalex.org/W4387773470","https://openalex.org/W6631190155","https://openalex.org/W6640212811","https://openalex.org/W6755207826","https://openalex.org/W6778883912"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W3009238340","https://openalex.org/W4321369474","https://openalex.org/W4360585206","https://openalex.org/W4285208911","https://openalex.org/W3082895349","https://openalex.org/W4213079790","https://openalex.org/W2248239756","https://openalex.org/W4323565446"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1],"of":[2,13,55,72,83,98,107,114],"peptide":[3],"spectra":[4,43],"is":[5],"crucial":[6],"for":[7,19,40],"improving":[8],"the":[9,80,96,105,112,115,122],"efficiency":[10],"and":[11,110],"reliability":[12],"proteomic":[14],"analysis,":[15],"as":[16,18,117],"well":[17],"gaining":[20],"insight":[21],"into":[22,89],"various":[23],"biological":[24],"processes.":[25],"In":[26],"this":[27],"study,":[28],"we":[29],"introduce":[30],"Deep":[31],"MS":[32],"Simulator":[33],"(DMSS),":[34],"a":[35,53,118],"novel":[36],"attention-based":[37],"model":[38],"tailored":[39],"forecasting":[41,66],"theoretical":[42,67],"in":[44,65,121],"mass":[45,90],"spectrometry.":[46],"DMSS":[47,73,116],"has":[48],"undergone":[49],"rigorous":[50],"validation":[51],"through":[52],"series":[54],"experiments,":[56],"consistently":[57],"demonstrating":[58],"superior":[59,70],"performance":[60],"compared":[61],"to":[62,74,94,104],"current":[63],"methods":[64],"spectra.":[68],"The":[69],"ability":[71],"distinguish":[75],"extremely":[76],"similar":[77],"peptides":[78],"highlights":[79],"potential":[81,113],"application":[82],"incorporating":[84],"our":[85],"predicted":[86],"intensity":[87],"information":[88],"spectrometry":[91],"search":[92],"engines":[93],"enhance":[95],"accuracy":[97],"protein":[99],"identification.":[100],"These":[101],"findings":[102],"contribute":[103],"advancement":[106],"proteomics":[108],"analysis":[109],"highlight":[111],"valuable":[119],"tool":[120],"field.":[123]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
