{"id":"https://openalex.org/W4310295249","doi":"https://doi.org/10.26599/bdma.2022.9020005","title":"FingerDTA: A Fingerprint-Embedding Framework for Drug-Target Binding Affinity Prediction","display_name":"FingerDTA: A Fingerprint-Embedding Framework for Drug-Target Binding Affinity Prediction","publication_year":2022,"publication_date":"2022-11-24","ids":{"openalex":"https://openalex.org/W4310295249","doi":"https://doi.org/10.26599/bdma.2022.9020005"},"language":"en","primary_location":{"id":"doi:10.26599/bdma.2022.9020005","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2022.9020005","pdf_url":"https://ieeexplore.ieee.org/ielx7/8254253/9962810/09963624.pdf","source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://ieeexplore.ieee.org/ielx7/8254253/9962810/09963624.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023118199","display_name":"Xuekai Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuekai Zhu","raw_affiliation_strings":["School of Computer Science, Wuhan University,Wuhan,China,430072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University,Wuhan,China,430072","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100446290","display_name":"Juan Liu","orcid":"https://orcid.org/0000-0001-9344-7415"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Liu","raw_affiliation_strings":["School of Computer Science, Wuhan University,Wuhan,China,430072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University,Wuhan,China,430072","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100605041","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0003-0052-2186"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["School of Computer Science, Wuhan University,Wuhan,China,430072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University,Wuhan,China,430072","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102490684","display_name":"Zhihui Yang","orcid":"https://orcid.org/0000-0002-1466-4786"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihui Yang","raw_affiliation_strings":["School of Computer Science, Wuhan University,Wuhan,China,430072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University,Wuhan,China,430072","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102714780","display_name":"Feng Yang","orcid":"https://orcid.org/0000-0003-2193-8551"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Yang","raw_affiliation_strings":["School of Computer Science, Wuhan University,Wuhan,China,430072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University,Wuhan,China,430072","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100450095","display_name":"Xiaolei Zhang","orcid":"https://orcid.org/0000-0001-9415-3136"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolei Zhang","raw_affiliation_strings":["School of Computer Science, Wuhan University,Wuhan,China,430072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University,Wuhan,China,430072","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5023118199"],"corresponding_institution_ids":["https://openalex.org/I37461747"],"apc_list":null,"apc_paid":null,"fwci":3.9616,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.94501442,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"1","last_page":"10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.6736084222793579},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5680879950523376},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.5520480275154114},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5098680257797241},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48725834488868713},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.43596673011779785},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41121408343315125},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3635147213935852},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.3259528875350952},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21062833070755005},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.20997342467308044},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16834992170333862}],"concepts":[{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.6736084222793579},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5680879950523376},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.5520480275154114},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5098680257797241},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48725834488868713},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.43596673011779785},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41121408343315125},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3635147213935852},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.3259528875350952},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21062833070755005},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.20997342467308044},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16834992170333862}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26599/bdma.2022.9020005","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2022.9020005","pdf_url":"https://ieeexplore.ieee.org/ielx7/8254253/9962810/09963624.pdf","source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:ee156446775e432c8f3fcde6a66d84b0","is_oa":true,"landing_page_url":"https://doaj.org/article/ee156446775e432c8f3fcde6a66d84b0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Big Data Mining and Analytics, Vol 6, Iss 1, Pp 1-10 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.26599/bdma.2022.9020005","is_oa":true,"landing_page_url":"https://doi.org/10.26599/bdma.2022.9020005","pdf_url":"https://ieeexplore.ieee.org/ielx7/8254253/9962810/09963624.pdf","source":{"id":"https://openalex.org/S4210209060","display_name":"Big Data Mining and Analytics","issn_l":"2096-0654","issn":["2096-0654"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311901","host_organization_name":"Tsinghua University Press","host_organization_lineage":["https://openalex.org/P4310311901"],"host_organization_lineage_names":["Tsinghua University Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Big Data Mining and Analytics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5199999809265137,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1434053985","display_name":null,"funder_award_id":"2019YFA0904300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4310295249.pdf","grobid_xml":"https://content.openalex.org/works/W4310295249.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1847895759","https://openalex.org/W1965057978","https://openalex.org/W1975147762","https://openalex.org/W1988037271","https://openalex.org/W2014469084","https://openalex.org/W2018698400","https://openalex.org/W2035585923","https://openalex.org/W2038702914","https://openalex.org/W2052214665","https://openalex.org/W2086286404","https://openalex.org/W2094702922","https://openalex.org/W2113469729","https://openalex.org/W2116139599","https://openalex.org/W2613462380","https://openalex.org/W2785947426","https://openalex.org/W2807907077","https://openalex.org/W2808013398","https://openalex.org/W2814412793","https://openalex.org/W2942559242","https://openalex.org/W2997591727","https://openalex.org/W3004604833","https://openalex.org/W3005088777","https://openalex.org/W3029573193","https://openalex.org/W3047361296","https://openalex.org/W3096561213","https://openalex.org/W3119799843","https://openalex.org/W4233314824","https://openalex.org/W4293363567","https://openalex.org/W6636510571","https://openalex.org/W6783945354","https://openalex.org/W6788526760"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2183306018","https://openalex.org/W2549990292","https://openalex.org/W2345479200","https://openalex.org/W2951819827","https://openalex.org/W2849310602","https://openalex.org/W2339806289","https://openalex.org/W2419146053","https://openalex.org/W4390443207","https://openalex.org/W4391636780"],"abstract_inverted_index":{"Many":[0],"efforts":[1],"have":[2,172],"been":[3,173],"exerted":[4],"toward":[5],"screening":[6,153],"potential":[7,154,175],"drugs":[8,134,155,171],"for":[9,102,156,190],"targets,":[10],"and":[11,18,65,83,115,144],"conducting":[12],"wet":[13],"experiments":[14],"remains":[15],"a":[16,99],"laborious":[17],"time-consuming":[19],"approach.":[20],"Artificial":[21],"intelligence":[22],"methods,":[23],"such":[24],"as":[25],"Convolutional":[26],"Neural":[27],"Network":[28],"(CNN),":[29],"are":[30,50,124,194],"widely":[31],"used":[32],"to":[33,39,92,111,118],"facilitate":[34],"new":[35],"drug":[36,188],"discovery.":[37],"Owing":[38],"the":[40,62,70,75,127,130,149,157,161,168,179],"structural":[41],"limitations":[42],"of":[43,80,129,133,152,160,167],"CNN,":[44],"features":[45],"extracted":[46,60,68],"from":[47,61,69],"this":[48],"method":[49],"local":[51,66,84,113],"patterns":[52,67,85,114],"that":[53,183],"lack":[54],"global":[55,58,81,120],"information.":[56,121],"However,":[57],"information":[59,82],"whole":[63,131],"sequence":[64,132],"special":[71],"domain":[72],"can":[73,86,185],"influence":[74],"drugtarget":[76],"affinity.":[77],"A":[78],"fusion":[79],"construct":[87],"neural":[88],"network":[89],"calculations":[90],"closer":[91],"actual":[93],"biological":[94],"processes.":[95],"This":[96],"paper":[97],"proposes":[98],"Fingerprint-embedding":[100],"framework":[101],"Drug-Target":[103],"binding":[104],"Affinity":[105],"prediction":[106],"(FingerDTA),":[107],"which":[108],"uses":[109],"CNN":[110],"extract":[112],"utilize":[116],"fingerprints":[117,123],"characterize":[119],"These":[122],"generated":[125],"on":[126,142],"basis":[128],"or":[135],"targets.":[136,191],"Furthermore,":[137],"FingerDTA":[138,184],"achieves":[139],"comparable":[140],"performance":[141],"Davis":[143],"KIBA":[145],"data":[146],"sets.":[147],"In":[148],"case":[150],"study":[151],"spike":[158],"protein":[159],"coronavirus":[162],"disease":[163],"2019":[164],"(COVID-19),":[165],"7":[166],"top":[169],"10":[170],"confirmed":[174],"by":[176],"literature.":[177],"Ultimately,":[178],"docking":[180],"experiment":[181],"demonstrates":[182],"find":[186],"novel":[187],"candidates":[189],"All":[192],"codes":[193],"available":[195],"at":[196],"http://lanproxy.biodwhu.cn:9099/mszjaas/FingerDTA.git.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":8}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
