{"id":"https://openalex.org/W3013530612","doi":"https://doi.org/10.26493/2590-9770.1252.e71","title":"Cograph editing: Merging modules is equivalent to editing P_4s","display_name":"Cograph editing: Merging modules is equivalent to editing P_4s","publication_year":2020,"publication_date":"2020-03-27","ids":{"openalex":"https://openalex.org/W3013530612","doi":"https://doi.org/10.26493/2590-9770.1252.e71","mag":"3013530612"},"language":"en","primary_location":{"id":"doi:10.26493/2590-9770.1252.e71","is_oa":true,"landing_page_url":"https://doi.org/10.26493/2590-9770.1252.e71","pdf_url":"https://adam-journal.eu/index.php/ADAM/article/download/1252/1122","source":{"id":"https://openalex.org/S4210222050","display_name":"The Art of Discrete and Applied Mathematics","issn_l":"2590-9770","issn":["2590-9770"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Art of Discrete and Applied Mathematics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://adam-journal.eu/index.php/ADAM/article/download/1252/1122","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047018638","display_name":"Adrian Fritz","orcid":"https://orcid.org/0000-0002-9853-5577"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adrian Fritz","raw_affiliation_strings":["Helmholtz Centre for Infection Research, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helmholtz Centre for Infection Research, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019719296","display_name":"Marc Hellmuth","orcid":"https://orcid.org/0000-0002-1620-5508"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marc Hellmuth","raw_affiliation_strings":["University of Leeds, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Leeds, United Kingdom","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["Leipzig University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leipzig University, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066462242","display_name":"Nicolas Wieseke","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nicolas Wieseke","raw_affiliation_strings":["Leipzig University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leipzig University, Germany","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7049,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.73398575,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"3","issue":"2","first_page":"#P2.01","last_page":"#P2.01"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9476000070571899,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9476000070571899,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12795","display_name":"Banana Cultivation and Research","score":0.9028000235557556,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6639937162399292},{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.6605483889579773},{"id":"https://openalex.org/keywords/cograph","display_name":"Cograph","score":0.6540152430534363},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5708507895469666},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.5237962007522583},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5063024759292603},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42246925830841064},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3770889639854431},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.37575769424438477},{"id":"https://openalex.org/keywords/pathwidth","display_name":"Pathwidth","score":0.32695478200912476},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11985424160957336},{"id":"https://openalex.org/keywords/line-graph","display_name":"Line graph","score":0.09860911965370178}],"concepts":[{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6639937162399292},{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.6605483889579773},{"id":"https://openalex.org/C59824394","wikidata":"https://www.wikidata.org/wiki/Q5141281","display_name":"Cograph","level":5,"score":0.6540152430534363},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5708507895469666},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.5237962007522583},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5063024759292603},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42246925830841064},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3770889639854431},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37575769424438477},{"id":"https://openalex.org/C43517604","wikidata":"https://www.wikidata.org/wiki/Q7144893","display_name":"Pathwidth","level":4,"score":0.32695478200912476},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11985424160957336},{"id":"https://openalex.org/C203776342","wikidata":"https://www.wikidata.org/wiki/Q1378376","display_name":"Line graph","level":3,"score":0.09860911965370178},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.26493/2590-9770.1252.e71","is_oa":true,"landing_page_url":"https://doi.org/10.26493/2590-9770.1252.e71","pdf_url":"https://adam-journal.eu/index.php/ADAM/article/download/1252/1122","source":{"id":"https://openalex.org/S4210222050","display_name":"The Art of Discrete and Applied Mathematics","issn_l":"2590-9770","issn":["2590-9770"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Art of Discrete and Applied Mathematics","raw_type":"journal-article"},{"id":"pmh:oai:eprints.whiterose.ac.uk:160328","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.26493/2590-9770.1252.e71","is_oa":true,"landing_page_url":"https://doi.org/10.26493/2590-9770.1252.e71","pdf_url":"https://adam-journal.eu/index.php/ADAM/article/download/1252/1122","source":{"id":"https://openalex.org/S4210222050","display_name":"The Art of Discrete and Applied Mathematics","issn_l":"2590-9770","issn":["2590-9770"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Art of Discrete and Applied Mathematics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G612624998","display_name":"Kombinatorische Methoden zur verbesserten Identifikation von Orthologen in gro\u00dfen Datens\u00e4tzen","funder_award_id":"432974470","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320312777","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320325298","display_name":"Universit\u00e4t Leipzig","ror":"https://ror.org/03s7gtk40"},{"id":"https://openalex.org/F4320327897","display_name":"Max-Planck-Institut f\u00fcr Mathematik in den Naturwissenschaften","ror":"https://ror.org/00ez2he07"},{"id":"https://openalex.org/F4320330723","display_name":"Deutsches Zentrum f\u00fcr integrative Biodiversit\u00e4tsforschung Halle-Jena-Leipzig","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3013530612.pdf","grobid_xml":"https://content.openalex.org/works/W3013530612.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W185036806","https://openalex.org/W1499662001","https://openalex.org/W1561983563","https://openalex.org/W1562378785","https://openalex.org/W1576293797","https://openalex.org/W1579049696","https://openalex.org/W1586744224","https://openalex.org/W1754878559","https://openalex.org/W1849163561","https://openalex.org/W1974006935","https://openalex.org/W1981374505","https://openalex.org/W1992296962","https://openalex.org/W2000138132","https://openalex.org/W2000763343","https://openalex.org/W2003177089","https://openalex.org/W2008978934","https://openalex.org/W2012224668","https://openalex.org/W2015906942","https://openalex.org/W2019030165","https://openalex.org/W2022221380","https://openalex.org/W2027604814","https://openalex.org/W2028775537","https://openalex.org/W2035632654","https://openalex.org/W2041346050","https://openalex.org/W2052388845","https://openalex.org/W2056697294","https://openalex.org/W2062584330","https://openalex.org/W2072445778","https://openalex.org/W2086058377","https://openalex.org/W2094742636","https://openalex.org/W2143327390","https://openalex.org/W2144050783","https://openalex.org/W2170633983","https://openalex.org/W2238809220","https://openalex.org/W2294558945","https://openalex.org/W2339182468","https://openalex.org/W2491013579","https://openalex.org/W2521512304","https://openalex.org/W2592818772","https://openalex.org/W2618066705","https://openalex.org/W2623837456","https://openalex.org/W2784303161","https://openalex.org/W2799178056","https://openalex.org/W2962759123","https://openalex.org/W2964266490","https://openalex.org/W2964289968","https://openalex.org/W2987931166","https://openalex.org/W3098656959","https://openalex.org/W3123623337","https://openalex.org/W3199287546","https://openalex.org/W4229933927","https://openalex.org/W4288400169","https://openalex.org/W4310930447"],"related_works":["https://openalex.org/W3217002439","https://openalex.org/W4304759748","https://openalex.org/W1977862280","https://openalex.org/W185036806","https://openalex.org/W4296414184","https://openalex.org/W2557667247","https://openalex.org/W4285659194","https://openalex.org/W3031065515","https://openalex.org/W2169699292","https://openalex.org/W2083238533"],"abstract_inverted_index":{"The":[0,36,90],"modular":[1,99,113],"decomposition":[2,100],"of":[3,28,51,81,87,93,97,104,131,153],"a":[4,21,31,48,62,132],"graph":[5],"G":[6,19,47,106],"=":[7,56],"(V,":[8,57],"E)":[9],"does":[10],"not":[11],"contain":[12],"prime":[13,127],"modules":[14,128],"if":[15,18,25],"and":[16,44,64,147],"only":[17],"is":[20,61,66,123,183],"cograph,":[22],"that":[23,54,102,118,149],"is,":[24],"no":[26],"quadruple":[27],"vertices":[29],"induces":[30],"simple":[32,91],"connected":[33],"path":[34],"P4.":[35],"cograph":[37,63,170,181],"editing":[38,105,119,171,182],"problem":[39,72,172],"consists":[40],"in":[41,78,95],"inserting":[42],"into":[43],"deleting":[45],"from":[46],"set":[49],"F":[50],"edges":[52],"so":[53],"H":[55],"E":[58],"\u25b3":[59],"F)":[60],"|F|":[65],"minimum.":[67],"This":[68,161],"NP-hard":[69],"combinatorial":[70],"optimization":[71],"has":[73],"recently":[74],"found":[75],"applications,":[76],"e.g.,":[77],"the":[79,112,120,138,169,186],"context":[80],"phylogenetics.":[82],"Efficient":[83],"heuristics":[84,194],"are":[85],"hence":[86],"practical":[88],"importance.":[89],"characterization":[92],"cographs":[94],"terms":[96],"their":[98],"suggests":[101],"instead":[103],"one":[107],"could":[108],"operate":[109],"directly":[110],"on":[111,137],"decomposition.":[114],"We":[115],"show":[116],"here":[117],"induced":[121],"P4s":[122],"equivalent":[124],"to":[125,164],"resolving":[126],"by":[129,185],"means":[130],"suitable":[133],"defined":[134],"merge":[135],"operation":[136],"submodules.":[139],"Moreover,":[140],"we":[141,191],"characterize":[142],"so-called":[143,187],"module-preserving":[144,154],"edit":[145,155],"sets":[146,156],"demonstrate":[148],"optimal":[150],"pairwise":[151],"sequences":[152],"exist":[157],"for":[158,168],"every":[159],"non-cograph.":[160],"eventually":[162],"leads":[163],"an":[165],"exact":[166],"algorithm":[167],"as":[173,175],"well":[174],"fixed-parameter":[176],"tractable":[177],"(FPT)":[178],"results":[179],"when":[180],"parameterized":[184],"modular-width.":[188],"In":[189],"addition,":[190],"provide":[192],"two":[193],"with":[195],"time":[196],"complexity":[197],"O(|V|3),":[198],"resp.,":[199],"O(|V|2).":[200]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
