{"id":"https://openalex.org/W6945718776","doi":"https://doi.org/10.25596/jalc-2003-579","title":"Computing all Repeats Using Suffix Arrays","display_name":"Computing all Repeats Using Suffix Arrays","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W6945718776","doi":"https://doi.org/10.25596/jalc-2003-579"},"language":"en","primary_location":{"id":"doi:10.25596/jalc-2003-579","is_oa":true,"landing_page_url":"https://doi.org/10.25596/jalc-2003-579","pdf_url":null,"source":{"id":"https://openalex.org/S7407052944","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.25596/jalc-2003-579","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Fran\u011bk, Franti\u0161ek","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fran\u011bk, Franti\u0161ek","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Smyth, William F.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Smyth, William F.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Tang, Yudong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tang, Yudong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.44070223,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11387","display_name":"Ichthyology and Marine Biology","score":0.11349999904632568,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11387","display_name":"Ichthyology and Marine Biology","score":0.11349999904632568,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12014","display_name":"Fish biology, ecology, and behavior","score":0.10019999742507935,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.0885000005364418,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.9889000058174133},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.7484999895095825},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.7461000084877014},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.6590999960899353},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6503000259399414},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.607200026512146}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.9889000058174133},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.7484999895095825},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.7461000084877014},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.6590999960899353},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6503000259399414},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.607200026512146},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.5895000100135803},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5009999871253967},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49950000643730164},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4496999979019165},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.414000004529953},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.384799987077713},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.3847000002861023},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.28790000081062317},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.26739999651908875},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.25929999351501465}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.25596/jalc-2003-579","is_oa":true,"landing_page_url":"https://doi.org/10.25596/jalc-2003-579","pdf_url":null,"source":{"id":"https://openalex.org/S7407052944","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.25596/jalc-2003-579","is_oa":true,"landing_page_url":"https://doi.org/10.25596/jalc-2003-579","pdf_url":null,"source":{"id":"https://openalex.org/S7407052944","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"We":[0],"describe":[1],"an":[2,55,65],"algorithm":[3,34],"that":[4,75,101,146],"identifies":[5],"all":[6,126],"the":[7,22,29,33,88,92,105,115,121,127],"repeating":[8,128,144],"substrings":[9,70,118,129,145],"(tandem,":[10],"overlapping,":[11],"and":[12,27,41],"split)":[13],"in":[14,45,84,130,137],"a":[15,50,60,95,138],"given":[16],"string":[17,31,96],"$x":[18],"=":[19],"x[1...n]$.":[20],"Given":[21],"suffix":[23,52,62],"arrays":[24],"of":[25,28,79,82,108,112,117],"$x$":[26],"reversed":[30],"$\\hat{x}$,":[32],"requires":[35],"$\\Theta(n)$":[36,46],"time":[37],"for":[38],"its":[39,43],"execution":[40],"represents":[42],"output":[44,69,119,133],"space,":[47],"either":[48,86],"as":[49,59],"reduced":[51,61],"array":[53],"(called":[54,64],"NE":[56,66],"array)":[57],"or":[58,90,99,150],"tree":[63],"tree).":[67],"The":[68,132],"$u$":[71,83],"are":[72],"nonextendible":[73],"(NE);":[74],"is,":[76],"any":[77],"extension":[78,107],"some":[80,109,148],"occurrence":[81,111],"$x$,":[85],"to":[87,91,104,124,141],"left":[89],"right,":[93],"yields":[94],"($\\lambda":[97],"u$":[98],"$u\\lambda$)":[100],"is":[102,120],"unequal":[103],"same":[106],"other":[110],"$u$.":[113],"Thus":[114],"number":[116],"minimum":[122,151],"required":[123],"identify":[125,142],"$x$.":[131],"can":[134],"be":[135],"used":[136],"straightforward":[139],"way":[140],"only":[143],"satisfy":[147],"proximity":[149],"length":[152],"condition.":[153]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
