{"id":"https://openalex.org/W2753431777","doi":"https://doi.org/10.25080/shinma-7f4c6e7-00e","title":"Python meets systems neuroscience: affordable, scalable and open-source electrophysiology in awake, behaving rodents","display_name":"Python meets systems neuroscience: affordable, scalable and open-source electrophysiology in awake, behaving rodents","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2753431777","doi":"https://doi.org/10.25080/shinma-7f4c6e7-00e","mag":"2753431777"},"language":"en","primary_location":{"id":"doi:10.25080/shinma-7f4c6e7-00e","is_oa":true,"landing_page_url":"https://doi.org/10.25080/shinma-7f4c6e7-00e","pdf_url":"http://conference.scipy.org/proceedings/scipy2017/pdfs/narendra_mukherjee.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th Python in Science Conference","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://conference.scipy.org/proceedings/scipy2017/pdfs/narendra_mukherjee.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040806893","display_name":"Narendra Mukherjee","orcid":"https://orcid.org/0000-0003-3808-2622"},"institutions":[{"id":"https://openalex.org/I6902469","display_name":"Brandeis University","ror":"https://ror.org/05abbep66","country_code":"US","type":"education","lineage":["https://openalex.org/I6902469"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Narendra Mukherjee","raw_affiliation_strings":["Graduate Program in Neuroscience, Brandeis University, Waltham, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Neuroscience, Brandeis University, Waltham, MA, USA","institution_ids":["https://openalex.org/I6902469"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012977804","display_name":"Joseph Wachutka","orcid":null},"institutions":[{"id":"https://openalex.org/I6902469","display_name":"Brandeis University","ror":"https://ror.org/05abbep66","country_code":"US","type":"education","lineage":["https://openalex.org/I6902469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Wachutka","raw_affiliation_strings":["Graduate Program in Neuroscience, Brandeis University, Waltham, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Program in Neuroscience, Brandeis University, Waltham, MA, USA","institution_ids":["https://openalex.org/I6902469"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002597607","display_name":"Donald B. Katz","orcid":"https://orcid.org/0000-0002-8444-6063"},"institutions":[{"id":"https://openalex.org/I6902469","display_name":"Brandeis University","ror":"https://ror.org/05abbep66","country_code":"US","type":"education","lineage":["https://openalex.org/I6902469"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donald Katz","raw_affiliation_strings":["Department of Psychology, Brandeis University, Waltham, MA, USA","Volen National Center for Complex Systems, Brandeis University, Waltham, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Psychology, Brandeis University, Waltham, MA, USA","institution_ids":["https://openalex.org/I6902469"]},{"raw_affiliation_string":"Volen National Center for Complex Systems, Brandeis University, Waltham, MA, USA","institution_ids":["https://openalex.org/I6902469"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5040806893"],"corresponding_institution_ids":["https://openalex.org/I6902469"],"apc_list":null,"apc_paid":null,"fwci":3.0658,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.92225669,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"98","last_page":"105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11601","display_name":"Neuroscience and Neural Engineering","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.904539942741394},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.726487398147583},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6706885099411011},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6384499073028564},{"id":"https://openalex.org/keywords/spike-sorting","display_name":"Spike sorting","score":0.6261038780212402},{"id":"https://openalex.org/keywords/electrophysiology","display_name":"Electrophysiology","score":0.5645720958709717},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3377577066421509},{"id":"https://openalex.org/keywords/spike","display_name":"Spike (software development)","score":0.3051391839981079},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2855879068374634},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23687204718589783},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2358112335205078},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.12126114964485168},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09741675853729248}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.904539942741394},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.726487398147583},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6706885099411011},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6384499073028564},{"id":"https://openalex.org/C2777613131","wikidata":"https://www.wikidata.org/wiki/Q2003571","display_name":"Spike sorting","level":3,"score":0.6261038780212402},{"id":"https://openalex.org/C185263204","wikidata":"https://www.wikidata.org/wiki/Q1154774","display_name":"Electrophysiology","level":2,"score":0.5645720958709717},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3377577066421509},{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.3051391839981079},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2855879068374634},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23687204718589783},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2358112335205078},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.12126114964485168},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09741675853729248}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.25080/shinma-7f4c6e7-00e","is_oa":true,"landing_page_url":"https://doi.org/10.25080/shinma-7f4c6e7-00e","pdf_url":"http://conference.scipy.org/proceedings/scipy2017/pdfs/narendra_mukherjee.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th Python in Science Conference","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.25080/shinma-7f4c6e7-00e","is_oa":true,"landing_page_url":"https://doi.org/10.25080/shinma-7f4c6e7-00e","pdf_url":"http://conference.scipy.org/proceedings/scipy2017/pdfs/narendra_mukherjee.pdf","source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 16th Python in Science Conference","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2753431777.pdf","grobid_xml":"https://content.openalex.org/works/W2753431777.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1742031854","https://openalex.org/W1967065559","https://openalex.org/W1983950468","https://openalex.org/W1985841281","https://openalex.org/W1990186908","https://openalex.org/W1995054497","https://openalex.org/W2000344096","https://openalex.org/W2010200201","https://openalex.org/W2011301426","https://openalex.org/W2024066636","https://openalex.org/W2038955527","https://openalex.org/W2085618124","https://openalex.org/W2096519870","https://openalex.org/W2101234009","https://openalex.org/W2119795785","https://openalex.org/W2126137307","https://openalex.org/W2134596343","https://openalex.org/W2136104104","https://openalex.org/W2162098123","https://openalex.org/W2171281863","https://openalex.org/W2269415044","https://openalex.org/W2325699217","https://openalex.org/W2328427632","https://openalex.org/W2404297683","https://openalex.org/W2531578201","https://openalex.org/W2605992499","https://openalex.org/W3023058184","https://openalex.org/W4239719188","https://openalex.org/W4247121563","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W1968361507","https://openalex.org/W3136143059","https://openalex.org/W3178771700","https://openalex.org/W2037099207","https://openalex.org/W3035015922","https://openalex.org/W4399305221","https://openalex.org/W2124872530","https://openalex.org/W2097405940","https://openalex.org/W2366422659","https://openalex.org/W4377004198"],"abstract_inverted_index":{"In-vivo":[0],"electrophysiology,":[1],"the":[2,7,66],"recording":[3],"of":[4,9,48,56,115],"neurons":[5],"in":[6,90],"brains":[8],"awake,":[10],"behaving":[11],"animals,":[12],"is":[13,19],"currently":[14],"undergoing":[15],"paradigm":[16],"shifts.":[17],"There":[18],"a":[20,57,73,82],"push":[21],"towards":[22],"moving":[23],"to":[24,32,76,100],"open-source":[25],"technologies":[26],"that":[27,59],"can:":[28],"1)":[29],"be":[30,36,95],"adjusted":[31],"specific":[33],"experiments;":[34],"2)":[35],"shared":[37],"with":[38],"ease;":[39],"and":[40,70,98,105],"3)":[41],"more":[42],"affordably":[43],"record":[44],"from":[45],"larger":[46],"numbers":[47],"electrodes":[49],"simultaneously.":[50],"Here":[51],"we":[52,80],"describe":[53],"our":[54],"construction":[55],"system":[58],"satisfies":[60],"these":[61],"three":[62],"desirable":[63],"properties":[64],"using":[65],"scientific":[67],"Python":[68],"stack":[69],"Linux.":[71],"Using":[72],"Raspberry":[74],"Pi":[75],"control":[77],"experimental":[78],"paradigms,":[79],"build":[81],"completely":[83],"open-source,":[84],"HDF5-based":[85],"analysis":[86],"(spike":[87],"sorting)":[88],"toolkit":[89,93],"Python.":[91],"This":[92],"can":[94],"easily":[96],"parallelized":[97],"scales":[99],"incorporate":[101],"increasing":[102],"electrode":[103],"counts":[104],"longer":[106],"recordings.":[107],"Our":[108],"rig":[109],"costs":[110],"about":[111],"$5000,":[112],"an":[113],"order":[114],"magnitude":[116],"less":[117],"than":[118],"many":[119],"comparable":[120],"commercially":[121],"available":[122],"electrophysiology":[123],"systems.":[124]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}