{"id":"https://openalex.org/W2542617869","doi":"https://doi.org/10.25080/majora-629e541a-007","title":"datreant: persistent, Pythonic trees for heterogeneous data","display_name":"datreant: persistent, Pythonic trees for heterogeneous data","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2542617869","doi":"https://doi.org/10.25080/majora-629e541a-007","mag":"2542617869"},"language":"en","primary_location":{"id":"doi:10.25080/majora-629e541a-007","is_oa":true,"landing_page_url":"https://doi.org/10.25080/majora-629e541a-007","pdf_url":"http://conference.scipy.org/proceedings/scipy2016/pdfs/david_dotson.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://conference.scipy.org/proceedings/scipy2016/pdfs/david_dotson.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039860950","display_name":"David Dotson","orcid":"https://orcid.org/0000-0001-5879-2942"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Dotson","raw_affiliation_strings":["Arizona State University, Tempe, Arizona, USA"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002271431","display_name":"Sean L. Seyler","orcid":"https://orcid.org/0000-0002-9434-4490"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Seyler","raw_affiliation_strings":["Arizona State University, Tempe, Arizona, USA"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071215879","display_name":"Max Linke","orcid":"https://orcid.org/0000-0002-7208-5088"},"institutions":[{"id":"https://openalex.org/I4210124035","display_name":"Max Planck Institute of Biophysics","ror":"https://ror.org/02panr271","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210124035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Max Linke","raw_affiliation_strings":["Max Planck Institut fr Biophysik, Frankfurt, Germany","Max Planck Institut f\u00fcr Biophysik, Frankfurt, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institut fr Biophysik, Frankfurt, Germany","institution_ids":["https://openalex.org/I4210124035"]},{"raw_affiliation_string":"Max Planck Institut f\u00fcr Biophysik, Frankfurt, Germany","institution_ids":["https://openalex.org/I4210124035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067172880","display_name":"Richard Gowers","orcid":"https://orcid.org/0000-0002-3241-1846"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Gowers","raw_affiliation_strings":["University of Manchester, Manchester, UK","|| University of Edinburgh, Edinburgh, UK"],"affiliations":[{"raw_affiliation_string":"University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"|| University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028356492","display_name":"Oliver Beckstein","orcid":"https://orcid.org/0000-0003-1340-0831"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Beckstein","raw_affiliation_strings":["Arizona State University, Tempe, Arizona, USA"],"affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, Arizona, USA","institution_ids":["https://openalex.org/I55732556"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039860950"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":null,"apc_paid":null,"fwci":2.0672,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.88856704,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"51","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8672147989273071},{"id":"https://openalex.org/keywords/netcdf","display_name":"NetCDF","score":0.8287887573242188},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.7834413051605225},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5974581241607666},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5710596442222595},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.487738698720932},{"id":"https://openalex.org/keywords/aggregate","display_name":"Aggregate (composite)","score":0.4605082869529724},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4226433336734772},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33031636476516724},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2997361421585083},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17458006739616394}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8672147989273071},{"id":"https://openalex.org/C11090531","wikidata":"https://www.wikidata.org/wiki/Q1361922","display_name":"NetCDF","level":2,"score":0.8287887573242188},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.7834413051605225},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5974581241607666},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5710596442222595},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.487738698720932},{"id":"https://openalex.org/C4679612","wikidata":"https://www.wikidata.org/wiki/Q866298","display_name":"Aggregate (composite)","level":2,"score":0.4605082869529724},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4226433336734772},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33031636476516724},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2997361421585083},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17458006739616394},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.25080/majora-629e541a-007","is_oa":true,"landing_page_url":"https://doi.org/10.25080/majora-629e541a-007","pdf_url":"http://conference.scipy.org/proceedings/scipy2016/pdfs/david_dotson.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.25080/majora-629e541a-007","is_oa":true,"landing_page_url":"https://doi.org/10.25080/majora-629e541a-007","pdf_url":"http://conference.scipy.org/proceedings/scipy2016/pdfs/david_dotson.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1636717100","display_name":"BB/J014478/1","funder_award_id":"BB/J014478/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G331002243","display_name":null,"funder_award_id":"Fellow","funder_id":"https://openalex.org/F4320322434","funder_display_name":"Max-Planck-Gesellschaft"},{"id":"https://openalex.org/G4716253616","display_name":null,"funder_award_id":"1443054","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5642555396","display_name":null,"funder_award_id":"ACI-10535","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G642131769","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320322434","funder_display_name":"Max-Planck-Gesellschaft"},{"id":"https://openalex.org/G6778350887","display_name":null,"funder_award_id":"1053575","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6894402473","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7908228807","display_name":null,"funder_award_id":"Molecular","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309835","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2542617869.pdf","grobid_xml":"https://content.openalex.org/works/W2542617869.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1798528872","https://openalex.org/W2146292423","https://openalex.org/W2152317018","https://openalex.org/W2170711116","https://openalex.org/W2342249984","https://openalex.org/W2527672088"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2357291590","https://openalex.org/W1515507694","https://openalex.org/W2003616250","https://openalex.org/W2385974176","https://openalex.org/W2357865405","https://openalex.org/W2032078682","https://openalex.org/W2354721555","https://openalex.org/W2474335847","https://openalex.org/W1582831445"],"abstract_inverted_index":{"In":[0],"science":[1],"the":[2,15,32,78],"filesystem":[3,33,99],"often":[4],"serves":[5],"as":[6,104,128],"a":[7,98],"de":[8],"facto":[9],"database,":[10],"with":[11,31,43,49,54,72,126,133],"directory":[12,44],"trees":[13],"being":[14],"zeroth-order":[16],"scientific":[17],"data":[18],"structure.":[19],"But":[20],"it":[21],"can":[22,58,65,100],"be":[23,59,66,102,120],"tedious":[24],"and":[25,36,46,62,69,80,111],"error":[26],"prone":[27],"to":[28,34,77,115,119],"work":[29],"directly":[30],"retrieve":[35],"store":[37],"heterogeneous":[38],"datasets.":[39],"datreant":[40,108],"makes":[41],"working":[42,132],"structures":[45],"files":[47,81],"Pythonic":[48],"Treants:":[50],"specially":[51],"marked":[52],"directories":[53,79],"distinguishing":[55],"characteristics":[56],"that":[57],"discovered,":[60],"queried,":[61],"filtered.":[63],"Treants":[64],"manipulated":[67,103],"individually":[68],"in":[70,82,88],"aggregate,":[71],"mechanisms":[73],"for":[74,131],"granular":[75],"access":[76],"their":[83],"trees.":[84],"Disparate":[85],"datasets":[86],"stored":[87],"any":[89],"format":[90],"(CSV,":[91],"HDF5,":[92],"NetCDF,":[93],"Feather,":[94],"etc.)":[95],"scattered":[96],"throughout":[97],"thus":[101],"meta-datasets":[105],"of":[106,124],"Treants.":[107],"is":[109],"modular":[110],"extensible":[112],"by":[113],"design":[114],"allow":[116],"specialized":[117],"applications":[118],"built":[121],"on":[122],"top":[123],"it,":[125],"MDSynthesis":[127],"an":[129],"example":[130],"molecular":[134],"dynamics":[135],"simulation":[136],"data.":[137]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
