{"id":"https://openalex.org/W3149892364","doi":"https://doi.org/10.25080/majora-4af1f417-018","title":"Proceedings of the 17th Python in Science Conference","display_name":"Proceedings of the 17th Python in Science Conference","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W3149892364","doi":"https://doi.org/10.25080/majora-4af1f417-018","mag":"3149892364"},"language":"en","primary_location":{"id":"doi:10.25080/majora-4af1f417-018","is_oa":true,"landing_page_url":"https://doi.org/10.25080/majora-4af1f417-018","pdf_url":"https://conference.scipy.org/proceedings/scipy2018/pdfs/proceedings.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://conference.scipy.org/proceedings/scipy2018/pdfs/proceedings.pdf","any_repository_has_fulltext":false},"authorships":[],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.245,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.85715003,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9042999744415283,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9042999744415283,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8188307285308838},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6191533207893372},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.40192803740501404}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8188307285308838},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6191533207893372},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.40192803740501404}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.25080/majora-4af1f417-018","is_oa":true,"landing_page_url":"https://doi.org/10.25080/majora-4af1f417-018","pdf_url":"https://conference.scipy.org/proceedings/scipy2018/pdfs/proceedings.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings"}],"best_oa_location":{"id":"doi:10.25080/majora-4af1f417-018","is_oa":true,"landing_page_url":"https://doi.org/10.25080/majora-4af1f417-018","pdf_url":"https://conference.scipy.org/proceedings/scipy2018/pdfs/proceedings.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5961315509","display_name":"Collaborative Research: ABI Innovation:Large-scale Analysis of the Evolution of Organellar Networks","funder_award_id":"1458766","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3149892364.pdf","grobid_xml":"https://content.openalex.org/works/W3149892364.grobid-xml"},"referenced_works_count":204,"referenced_works":["https://openalex.org/W134960717","https://openalex.org/W146699588","https://openalex.org/W147232447","https://openalex.org/W180363102","https://openalex.org/W205829674","https://openalex.org/W616025253","https://openalex.org/W619562747","https://openalex.org/W629766666","https://openalex.org/W650923498","https://openalex.org/W1544621094","https://openalex.org/W1591377857","https://openalex.org/W1595114968","https://openalex.org/W1597325125","https://openalex.org/W1749804791","https://openalex.org/W1798528872","https://openalex.org/W1836465849","https://openalex.org/W1857053476","https://openalex.org/W1901129140","https://openalex.org/W1903029394","https://openalex.org/W1928823211","https://openalex.org/W1952152691","https://openalex.org/W1957403495","https://openalex.org/W1966030549","https://openalex.org/W1973749534","https://openalex.org/W1974695870","https://openalex.org/W1975761970","https://openalex.org/W1976182638","https://openalex.org/W1976970322","https://openalex.org/W1985462363","https://openalex.org/W1988463647","https://openalex.org/W1998033943","https://openalex.org/W1999094940","https://openalex.org/W2001603582","https://openalex.org/W2003393310","https://openalex.org/W2007150243","https://openalex.org/W2009138447","https://openalex.org/W2012995687","https://openalex.org/W2016424197","https://openalex.org/W2019465613","https://openalex.org/W2022584152","https://openalex.org/W2024753102","https://openalex.org/W2027136419","https://openalex.org/W2028647041","https://openalex.org/W2029152125","https://openalex.org/W2032113267","https://openalex.org/W2032857806","https://openalex.org/W2041220308","https://openalex.org/W2045823794","https://openalex.org/W2047813468","https://openalex.org/W2048621586","https://openalex.org/W2051434435","https://openalex.org/W2053869505","https://openalex.org/W2053989393","https://openalex.org/W2058358751","https://openalex.org/W2059009119","https://openalex.org/W2060968031","https://openalex.org/W2061910674","https://openalex.org/W2061939373","https://openalex.org/W2062791478","https://openalex.org/W2064186732","https://openalex.org/W2065184196","https://openalex.org/W2069967271","https://openalex.org/W2074052524","https://openalex.org/W2077637253","https://openalex.org/W2078391824","https://openalex.org/W2079336662","https://openalex.org/W2080134734","https://openalex.org/W2081400318","https://openalex.org/W2083217178","https://openalex.org/W2083846574","https://openalex.org/W2084583092","https://openalex.org/W2085373510","https://openalex.org/W2087953788","https://openalex.org/W2092683690","https://openalex.org/W2094081351","https://openalex.org/W2096555119","https://openalex.org/W2100358124","https://openalex.org/W2101234009","https://openalex.org/W2101912841","https://openalex.org/W2104279568","https://openalex.org/W2105046342","https://openalex.org/W2105934661","https://openalex.org/W2106411961","https://openalex.org/W2106488195","https://openalex.org/W2109453456","https://openalex.org/W2110114082","https://openalex.org/W2117997410","https://openalex.org/W2124351162","https://openalex.org/W2127890285","https://openalex.org/W2135625048","https://openalex.org/W2138465606","https://openalex.org/W2144061891","https://openalex.org/W2146292423","https://openalex.org/W2147006077","https://openalex.org/W2148129885","https://openalex.org/W2148717491","https://openalex.org/W2155122056","https://openalex.org/W2156099691","https://openalex.org/W2156267802","https://openalex.org/W2158438518","https://openalex.org/W2161969291","https://openalex.org/W2170048175","https://openalex.org/W2187302797","https://openalex.org/W2189465200","https://openalex.org/W2194775991","https://openalex.org/W2229506676","https://openalex.org/W2253894436","https://openalex.org/W2260567607","https://openalex.org/W2304387544","https://openalex.org/W2330532773","https://openalex.org/W2334748645","https://openalex.org/W2334751482","https://openalex.org/W2406493898","https://openalex.org/W2409039560","https://openalex.org/W2429443795","https://openalex.org/W2468640254","https://openalex.org/W2472803348","https://openalex.org/W2480680997","https://openalex.org/W2507189783","https://openalex.org/W2507387536","https://openalex.org/W2507767929","https://openalex.org/W2520200494","https://openalex.org/W2522000147","https://openalex.org/W2524554423","https://openalex.org/W2525726046","https://openalex.org/W2527672088","https://openalex.org/W2529052661","https://openalex.org/W2537364430","https://openalex.org/W2542617869","https://openalex.org/W2542975534","https://openalex.org/W2547058912","https://openalex.org/W2555380110","https://openalex.org/W2560023338","https://openalex.org/W2560565629","https://openalex.org/W2565639579","https://openalex.org/W2567162135","https://openalex.org/W2570343428","https://openalex.org/W2591242554","https://openalex.org/W2595017202","https://openalex.org/W2604779588","https://openalex.org/W2605743509","https://openalex.org/W2606474930","https://openalex.org/W2617667835","https://openalex.org/W2619737983","https://openalex.org/W2625915898","https://openalex.org/W2734936567","https://openalex.org/W2741200677","https://openalex.org/W2744123532","https://openalex.org/W2749357784","https://openalex.org/W2753061367","https://openalex.org/W2754336679","https://openalex.org/W2762059685","https://openalex.org/W2769397138","https://openalex.org/W2769693452","https://openalex.org/W2782680991","https://openalex.org/W2785073945","https://openalex.org/W2793993424","https://openalex.org/W2794015091","https://openalex.org/W2794322308","https://openalex.org/W2794413559","https://openalex.org/W2795405084","https://openalex.org/W2799736620","https://openalex.org/W2807521955","https://openalex.org/W2896504779","https://openalex.org/W2908167297","https://openalex.org/W2951220536","https://openalex.org/W2953656961","https://openalex.org/W2963037989","https://openalex.org/W2963798744","https://openalex.org/W2963998669","https://openalex.org/W3009459310","https://openalex.org/W3011087513","https://openalex.org/W3013295669","https://openalex.org/W3101292296","https://openalex.org/W3105243820","https://openalex.org/W3105384870","https://openalex.org/W3109938142","https://openalex.org/W3113043731","https://openalex.org/W3121974814","https://openalex.org/W3125363972","https://openalex.org/W3125813198","https://openalex.org/W3138798301","https://openalex.org/W3150648859","https://openalex.org/W4205474225","https://openalex.org/W4205962651","https://openalex.org/W4230252700","https://openalex.org/W4230668035","https://openalex.org/W4234432825","https://openalex.org/W4248681815","https://openalex.org/W4287901611","https://openalex.org/W4288400169","https://openalex.org/W4292875581","https://openalex.org/W4298826872","https://openalex.org/W4302392255","https://openalex.org/W4311150486","https://openalex.org/W4320168510","https://openalex.org/W4387113656","https://openalex.org/W6675354045","https://openalex.org/W6683411478","https://openalex.org/W6749854109","https://openalex.org/W6763883261","https://openalex.org/W6857177763","https://openalex.org/W6967521669","https://openalex.org/W7073802029"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W1906486629"],"abstract_inverted_index":{"The":[0,211],"use":[1],"of":[2,16,77,92,100,108,123,139,150,153,169,194,205,232,239,280,292],"fluorescence":[3,278],"microscopy":[4],"has":[5],"catalyzed":[6],"new":[7],"insights":[8],"into":[9,88],"biological":[10,39,81],"function,":[11],"and":[12,34,111,128,162,177,226,297],"spurred":[13],"the":[14,113,136,140,151,157,182,202,206,227,230,233,240,261],"development":[15],"quantitative":[17,36,290],"models":[18,91,274],"from":[19,38,79,275],"rich":[20],"biomedical":[21],"image":[22,25],"datasets.":[23],"While":[24],"processing":[26],"in":[27,167,229,260],"some":[28],"capacity":[29],"is":[30,197],"commonplace":[31],"for":[32,46],"extracting":[33],"modeling":[35,49,69],"knowledge":[37],"systems":[40],"at":[41],"varying":[42],"scales,":[43],"general-purpose":[44],"approaches":[45],"more":[47],"advanced":[48],"are":[50],"few.":[51],"In":[52],"particular,":[53],"diffuse":[54,93,114,281],"organellar":[55],"morphologies,":[56,95],"such":[57,173],"as":[58,117,174],"mitochondria":[59,158],"or":[60],"actin":[61],"microtubules,":[62],"have":[63],"few":[64],"if":[65],"any":[66],"established":[67],"spatiotemporal":[68,90,203],"strategies,":[70],"all":[71],"but":[72],"discarding":[73],"critically":[74],"important":[75],"sources":[76],"signal":[78],"a":[80,118,121,147,191,224,252,288],"system.":[82],"Here,":[83],"we":[84,145],"discuss":[85],"initial":[86],"work":[87],"building":[89],"subcellular":[94,282],"using":[96,190,255],"mitochondrial":[97,115,183,207],"protein":[98,283],"patterns":[99,116,208],"cervical":[101],"epithelial":[102],"(HeLa)":[103],"cells.":[104],"We":[105,179,243],"leverage":[106,246],"principles":[107],"graph":[109,170,220],"theory":[110],"consider":[112],"social":[119,141,272],"network:":[120],"collection":[122],"vertices":[124],"interconnected":[125],"by":[126,159],"weighted":[127],"directed":[129],"edges,":[130],"indicating":[131],"spatial":[132],"relationships.":[133],"By":[134],"studying":[135],"changing":[137],"topology":[138,231],"networks":[142],"over":[143,209,295],"time,":[144],"gain":[146],"mechanistic":[148],"understanding":[149],"types":[152],"stresses":[154],"imposed":[155],"on":[156],"external":[160],"stimuli,":[161],"can":[163,185,215,235],"relate":[164],"these":[165,247],"effects":[166],"terms":[168],"theoretic":[171],"quantities":[172],"centrality,":[175],"connectivity,":[176],"flow.":[178],"demonstrate":[180],"how":[181],"pattern":[184],"be":[186,217],"faithfully":[187],"represented":[188],"parametrically":[189],"learned":[192,212],"mixture":[193],"Gaussians,":[195],"which":[196,269],"then":[198,216],"perturbed":[199],"to":[200,219,245,250,301],"match":[201],"evolution":[204],"time.":[210],"Gaussian":[213],"components":[214],"converted":[218],"Laplacians,":[221],"formally":[222],"defining":[223],"network,":[225],"changes":[228],"Laplacians":[234],"yield":[236],"biologically-meaningful":[237],"interpretations":[238],"evolving":[241],"morphology.":[242],"hope":[244],"preliminary":[248],"results":[249],"implement":[251],"bioimaging":[253],"toolbox,":[254],"existing":[256],"open":[257],"source":[258],"packages":[259],"scientific":[262],"Python":[263],"ecosystem":[264],"(SciPy,":[265],"NumPy,":[266],"scikit-image,":[267],"OpenCV),":[268],"builds":[270],"dynamic":[271],"network":[273,293],"time":[276,296],"series":[277],"images":[279],"patterns.":[284],"This":[285],"will":[286],"enable":[287],"direct":[289],"comparison":[291],"structure":[294],"between":[298],"cells":[299],"exposed":[300],"different":[302],"conditions.":[303]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
