{"id":"https://openalex.org/W4385627674","doi":"https://doi.org/10.25080/gerudo-f2bc6f59-00a","title":"MDAKits: A Framework for FAIR-Compliant Molecular Simulation Analysis","display_name":"MDAKits: A Framework for FAIR-Compliant Molecular Simulation Analysis","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4385627674","doi":"https://doi.org/10.25080/gerudo-f2bc6f59-00a"},"language":"en","primary_location":{"id":"doi:10.25080/gerudo-f2bc6f59-00a","is_oa":true,"landing_page_url":"https://doi.org/10.25080/gerudo-f2bc6f59-00a","pdf_url":"https://conference.scipy.org/proceedings/scipy2023/pdfs/ian_kenney.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://conference.scipy.org/proceedings/scipy2023/pdfs/ian_kenney.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019650412","display_name":"Irfan Alibay","orcid":"https://orcid.org/0000-0001-5787-9130"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Irfan Alibay","raw_affiliation_strings":["Open Molecular Software Foundation, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0001-5787-9130","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation, Irvine, CA, USA","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077543727","display_name":"Lily Wang","orcid":"https://orcid.org/0000-0002-6095-6704"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lily Wang","raw_affiliation_strings":["Open Molecular Software Foundation, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-6095-6704","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation, Irvine, CA, USA","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021186645","display_name":"Fiona B. Naughton","orcid":"https://orcid.org/0000-0003-0162-1346"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fiona Naughton","raw_affiliation_strings":["Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA, USA"],"raw_orcid":"https://orcid.org/0000-0003-0162-1346","affiliations":[{"raw_affiliation_string":"Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014776905","display_name":"Ian M. Kenney","orcid":"https://orcid.org/0000-0002-9749-8866"},"institutions":[{"id":"https://openalex.org/I4210111807","display_name":"Center for Research in Molecular Medicine and Chronic Diseases","ror":"https://ror.org/0280bnq76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210111807"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Ian Kenney","raw_affiliation_strings":["|| Centro Singular de Investigaci\u00f3n en Tecnolox\u00edas Intelixentes, Santiago de Compostela, Spain","Arizona State University, Tempe, AZ, USA"],"raw_orcid":"https://orcid.org/0000-0002-9749-8866","affiliations":[{"raw_affiliation_string":"|| Centro Singular de Investigaci\u00f3n en Tecnolox\u00edas Intelixentes, Santiago de Compostela, Spain","institution_ids":["https://openalex.org/I4210111807"]},{"raw_affiliation_string":"Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010416659","display_name":"Jonathan Barnoud","orcid":"https://orcid.org/0000-0003-0343-7796"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jonathan Barnoud","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-0343-7796","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067172880","display_name":"Richard Gowers","orcid":"https://orcid.org/0000-0002-3241-1846"},"institutions":[{"id":"https://openalex.org/I4400573198","display_name":"Open Molecular Software Foundation","ror":"https://ror.org/02en65a92","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4400573198"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Gowers","raw_affiliation_strings":["Open Molecular Software Foundation, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-3241-1846","affiliations":[{"raw_affiliation_string":"Open Molecular Software Foundation, Irvine, CA, USA","institution_ids":["https://openalex.org/I4400573198"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028356492","display_name":"Oliver Beckstein","orcid":"https://orcid.org/0000-0003-1340-0831"},"institutions":[{"id":"https://openalex.org/I4210111807","display_name":"Center for Research in Molecular Medicine and Chronic Diseases","ror":"https://ror.org/0280bnq76","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210111807"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Oliver Beckstein","raw_affiliation_strings":["Arizona State University, Tempe, AZ, USA","|| Centro Singular de Investigaci\u00f3n en Tecnolox\u00edas Intelixentes, Santiago de Compostela, Spain"],"raw_orcid":"https://orcid.org/0000-0003-1340-0831","affiliations":[{"raw_affiliation_string":"Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"|| Centro Singular de Investigaci\u00f3n en Tecnolox\u00edas Intelixentes, Santiago de Compostela, Spain","institution_ids":["https://openalex.org/I4210111807"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5019650412"],"corresponding_institution_ids":["https://openalex.org/I4400573198"],"apc_list":null,"apc_paid":null,"fwci":4.2906,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.94846916,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"76","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7357182502746582},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6868510246276855},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5565330386161804},{"id":"https://openalex.org/keywords/blueprint","display_name":"Blueprint","score":0.5360771417617798},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.49843454360961914},{"id":"https://openalex.org/keywords/best-practice","display_name":"Best practice","score":0.48271772265434265},{"id":"https://openalex.org/keywords/open-science","display_name":"Open science","score":0.4796924293041229},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.46527785062789917},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4521600604057312},{"id":"https://openalex.org/keywords/publication","display_name":"Publication","score":0.43877744674682617},{"id":"https://openalex.org/keywords/interoperation","display_name":"Interoperation","score":0.4148886799812317},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.41283920407295227},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4106561243534088},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.184636652469635},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.17283901572227478},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13076356053352356}],"concepts":[{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7357182502746582},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6868510246276855},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5565330386161804},{"id":"https://openalex.org/C155911762","wikidata":"https://www.wikidata.org/wiki/Q422321","display_name":"Blueprint","level":2,"score":0.5360771417617798},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.49843454360961914},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.48271772265434265},{"id":"https://openalex.org/C2778149293","wikidata":"https://www.wikidata.org/wiki/Q309823","display_name":"Open science","level":2,"score":0.4796924293041229},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.46527785062789917},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4521600604057312},{"id":"https://openalex.org/C41458344","wikidata":"https://www.wikidata.org/wiki/Q732577","display_name":"Publication","level":2,"score":0.43877744674682617},{"id":"https://openalex.org/C139458680","wikidata":"https://www.wikidata.org/wiki/Q12184942","display_name":"Interoperation","level":3,"score":0.4148886799812317},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.41283920407295227},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4106561243534088},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.184636652469635},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.17283901572227478},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13076356053352356},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C112698675","wikidata":"https://www.wikidata.org/wiki/Q37038","display_name":"Advertising","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.25080/gerudo-f2bc6f59-00a","is_oa":true,"landing_page_url":"https://doi.org/10.25080/gerudo-f2bc6f59-00a","pdf_url":"https://conference.scipy.org/proceedings/scipy2023/pdfs/ian_kenney.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.25080/gerudo-f2bc6f59-00a","is_oa":true,"landing_page_url":"https://doi.org/10.25080/gerudo-f2bc6f59-00a","pdf_url":"https://conference.scipy.org/proceedings/scipy2023/pdfs/ian_kenney.pdf","source":{"id":"https://openalex.org/S4220651651","display_name":"Proceedings of the Python in Science Conferences","issn_l":"2575-9752","issn":["2575-9752"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Python in Science Conference","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1218400627","display_name":null,"funder_award_id":"2019-2022","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1869016439","display_name":null,"funder_award_id":"2019-2022","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2601125725","display_name":null,"funder_award_id":"ED431G-2019/04","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G385904078","display_name":null,"funder_award_id":"2019-2022 ED431G-2019/04","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G3876637791","display_name":null,"funder_award_id":"ED431G","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G4912030886","display_name":null,"funder_award_id":"2019-2022","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6206803543","display_name":null,"funder_award_id":"2019-2022 ED431G-2019/04","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6689507146","display_name":null,"funder_award_id":"ED431G-2019/04","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7193505718","display_name":null,"funder_award_id":"10.13039/100014989","funder_id":"https://openalex.org/F4320306192","funder_display_name":"Silicon Valley Community Foundation"},{"id":"https://openalex.org/G8058219222","display_name":null,"funder_award_id":"2019-2022","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8367616569","display_name":null,"funder_award_id":"2021-2024","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8716553302","display_name":null,"funder_award_id":"2021-2024","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"}],"funders":[{"id":"https://openalex.org/F4320306192","display_name":"Silicon Valley Community Foundation","ror":"https://ror.org/001ader08"},{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4385627674.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1970143564","https://openalex.org/W2043901383","https://openalex.org/W2092758208","https://openalex.org/W2149442325","https://openalex.org/W2170711116","https://openalex.org/W2302501749","https://openalex.org/W2332712348","https://openalex.org/W2510475640","https://openalex.org/W2949223833","https://openalex.org/W2970740744","https://openalex.org/W3035815479","https://openalex.org/W3087181314","https://openalex.org/W3137481963","https://openalex.org/W3195777757","https://openalex.org/W3203735717","https://openalex.org/W4210269813","https://openalex.org/W4288076474","https://openalex.org/W4288400169","https://openalex.org/W6931374889","https://openalex.org/W6931504557","https://openalex.org/W6949831108","https://openalex.org/W6962358799","https://openalex.org/W6968639287"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4206368770","https://openalex.org/W4312103929","https://openalex.org/W2998958378","https://openalex.org/W3117184711","https://openalex.org/W4206002787","https://openalex.org/W4224270597","https://openalex.org/W4295905006","https://openalex.org/W134180369","https://openalex.org/W3119889732"],"abstract_inverted_index":{"The":[0,81,154],"reproducibility":[1],"and":[2,27,42,79,91,105,112,135,183,224],"transparency":[3],"of":[4,59,74,108,190,213,217],"scientific":[5,14,21,238],"findings":[6],"are":[7,98,166],"widely":[8],"recognized":[9],"as":[10],"crucial":[11],"for":[12,62,156,172,198,222,230,233],"promoting":[13],"progress.":[15],"However,":[16],"when":[17],"it":[18],"comes":[19],"to":[20,30,37,127,142,168,200,209,226],"software,":[22],"researchers":[23,199],"face":[24],"many":[25],"barriers":[26],"few":[28],"incentives":[29],"ensure":[31],"that":[32,69],"their":[33,113,151],"software":[34,178],"is":[35,116],"open":[36],"the":[38,49,57,63,71,102,109,123,137,169,188,204,211],"community,":[39],"thoroughly":[40],"tested,":[41],"easily":[43],"accessible.":[44],"To":[45],"address":[46],"this":[47],"issue,":[48],"MDAKits":[50,205],"framework":[51,83],"has":[52],"been":[53],"developed,":[54],"which":[55],"simplifies":[56],"process":[58],"creating":[60,194],"toolkits":[61],"MDAnalysis":[64,110,223],"simulation":[65],"analysis":[66],"package":[67,138],"(https://www.mdanalysis.org/)":[68],"follow":[70],"basic":[72],"principles":[73],"FAIR":[75],"(findability,":[76],"accessibility,":[77],"interoperability,":[78],"reusability).":[80],"MDAKit":[82,149,159],"provides":[84],"a":[85,92,148,174,177,214,228,231],"cookiecutter":[86],"template,":[87],"best":[88],"practices":[89],"documentation,":[90,164],"continually":[93,99],"validated":[94],"registry.":[95],"Registered":[96],"kits":[97],"tested":[100],"against":[101],"latest":[103],"release":[104],"development":[106],"version":[107,162],"library":[111],"code":[114],"health":[115,139],"indicated":[117],"with":[118],"badges.":[119],"Users":[120],"can":[121],"browse":[122],"registry":[124],"frontend":[125],"(https://mdakits.mdanalysis.org/)":[126],"find":[128],"new":[129],"packages,":[130],"learn":[131],"about":[132,146],"associated":[133],"publications,":[134],"assess":[136],"in":[140,150,176],"order":[141],"make":[143],"informed":[144],"decisions":[145],"using":[147],"own":[152],"research.":[153],"criteria":[155,170],"registering":[157],"an":[158],"(open":[160],"source,":[161],"control,":[163],"tests)":[165],"similar":[167],"required":[171],"publishing":[173],"paper":[175],"journal,":[179],"so":[180],"we":[181,207],"encourage":[182],"support":[184],"publication":[185],"in,":[186],"e.g.,":[187],"Journal":[189],"Open":[191],"Source":[192],"Software,":[193],"further":[195],"academic":[196],"incentive":[197],"publish":[201],"code.":[202],"Through":[203],"framework,":[206],"aim":[208],"foster":[210],"creation":[212],"diverse":[215],"ecosystem":[216],"sustainable":[218],"community-driven":[219],"downstream":[220],"tools":[221],"hope":[225],"provide":[227],"blueprint":[229],"model":[232],"growing":[234],"communities":[235],"around":[236],"other":[237],"packages.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
