{"id":"https://openalex.org/W4385768173","doi":"https://doi.org/10.24963/ijcai.2023/556","title":"MolHF: A Hierarchical Normalizing Flow for Molecular Graph Generation","display_name":"MolHF: A Hierarchical Normalizing Flow for Molecular Graph Generation","publication_year":2023,"publication_date":"2023-08-01","ids":{"openalex":"https://openalex.org/W4385768173","doi":"https://doi.org/10.24963/ijcai.2023/556"},"language":"en","primary_location":{"id":"doi:10.24963/ijcai.2023/556","is_oa":true,"landing_page_url":"https://doi.org/10.24963/ijcai.2023/556","pdf_url":"https://www.ijcai.org/proceedings/2023/0556.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.ijcai.org/proceedings/2023/0556.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052610760","display_name":"Yiheng Zhu","orcid":"https://orcid.org/0000-0002-3857-1533"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yiheng Zhu","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040124264","display_name":"Zhenqiu Ouyang","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenqiu Ouyang","raw_affiliation_strings":["Polytechnic Institute, Zhejiang University"],"affiliations":[{"raw_affiliation_string":"Polytechnic Institute, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064163623","display_name":"Ben Liao","orcid":"https://orcid.org/0000-0002-5084-2682"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ben Liao","raw_affiliation_strings":["Tencent Quantum Laboratory, Tencent"],"affiliations":[{"raw_affiliation_string":"Tencent Quantum Laboratory, Tencent","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101203525","display_name":"Jialu Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialu Wu","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University","School of Public Health, Zhejiang University","Second Affiliated Hospital School of Medicine, Zhejiang University"],"affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"School of Public Health, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Second Affiliated Hospital School of Medicine, Zhejiang University","institution_ids":["https://openalex.org/I4210158318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101857635","display_name":"Yixuan Wu","orcid":"https://orcid.org/0000-0002-3521-6894"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixuan Wu","raw_affiliation_strings":["School of Public Health, Zhejiang University"],"affiliations":[{"raw_affiliation_string":"School of Public Health, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008663435","display_name":"Chang\u2010Yu Hsieh","orcid":"https://orcid.org/0000-0002-6242-4218"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang-Yu Hsieh","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University"],"affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028525523","display_name":"Tingjun Hou","orcid":"https://orcid.org/0000-0001-7227-2580"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingjun Hou","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University"],"affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101913769","display_name":"Jian Wu","orcid":"https://orcid.org/0000-0003-4518-7027"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wu","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University","School of Public Health, Zhejiang University","Second Affiliated Hospital School of Medicine, Zhejiang University","Second Affiliated Hospital School of Medicine, Zhejiang University {zhuyiheng2020, oyzq,"],"affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"School of Public Health, Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Second Affiliated Hospital School of Medicine, Zhejiang University","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Second Affiliated Hospital School of Medicine, Zhejiang University {zhuyiheng2020, oyzq,","institution_ids":["https://openalex.org/I4210158318"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5052610760"],"corresponding_institution_ids":["https://openalex.org/I168879160"],"apc_list":null,"apc_paid":null,"fwci":0.3747,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.50896872,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"5002","last_page":"5010"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.738469660282135},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5999240279197693},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.5924437046051025},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5813114643096924},{"id":"https://openalex.org/keywords/differentiable-function","display_name":"Differentiable function","score":0.5507949590682983},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4971325695514679},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48461756110191345},{"id":"https://openalex.org/keywords/hierarchical-database-model","display_name":"Hierarchical database model","score":0.4478949010372162},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.42194557189941406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30384111404418945},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21532109379768372},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12993481755256653}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.738469660282135},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5999240279197693},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.5924437046051025},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5813114643096924},{"id":"https://openalex.org/C202615002","wikidata":"https://www.wikidata.org/wiki/Q783507","display_name":"Differentiable function","level":2,"score":0.5507949590682983},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4971325695514679},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48461756110191345},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.4478949010372162},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.42194557189941406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30384111404418945},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21532109379768372},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12993481755256653},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.24963/ijcai.2023/556","is_oa":true,"landing_page_url":"https://doi.org/10.24963/ijcai.2023/556","pdf_url":"https://www.ijcai.org/proceedings/2023/0556.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.24963/ijcai.2023/556","is_oa":true,"landing_page_url":"https://doi.org/10.24963/ijcai.2023/556","pdf_url":"https://www.ijcai.org/proceedings/2023/0556.pdf","source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1899008360","display_name":null,"funder_award_id":"62176231","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3999968595","display_name":null,"funder_award_id":"2020C03010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7903508730","display_name":null,"funder_award_id":"22220102001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8294811397","display_name":null,"funder_award_id":"22201020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8485754496","display_name":null,"funder_award_id":"2201020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4385768173.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1583912456","https://openalex.org/W1959608418","https://openalex.org/W2022476850","https://openalex.org/W2023818227","https://openalex.org/W2027482274","https://openalex.org/W2604314403","https://openalex.org/W2606780347","https://openalex.org/W2786722833","https://openalex.org/W2912298597","https://openalex.org/W2951659295","https://openalex.org/W2963090522","https://openalex.org/W2963521729","https://openalex.org/W2964015378","https://openalex.org/W2994860160","https://openalex.org/W3005111505","https://openalex.org/W3035236454","https://openalex.org/W3036174665","https://openalex.org/W3040304705","https://openalex.org/W3095176653","https://openalex.org/W3098269892","https://openalex.org/W3099414221","https://openalex.org/W3102176376","https://openalex.org/W3137385578","https://openalex.org/W3150807214","https://openalex.org/W3174289479","https://openalex.org/W3176507666","https://openalex.org/W3187338951","https://openalex.org/W4287352999","https://openalex.org/W4287756229","https://openalex.org/W4288346884","https://openalex.org/W4293849739","https://openalex.org/W4294643831","https://openalex.org/W4297162533","https://openalex.org/W4297798428","https://openalex.org/W4297951436","https://openalex.org/W4302008537","https://openalex.org/W4319793309","https://openalex.org/W4320013936","https://openalex.org/W4320930577"],"related_works":["https://openalex.org/W4365211920","https://openalex.org/W3014948380","https://openalex.org/W4380551139","https://openalex.org/W4317695495","https://openalex.org/W4287117424","https://openalex.org/W4387506531","https://openalex.org/W2087346071","https://openalex.org/W2967848559","https://openalex.org/W4299831724","https://openalex.org/W4283803360"],"abstract_inverted_index":{"Molecular":[0],"de":[1],"novo":[2],"design":[3,15],"is":[4,38,83,179],"a":[5,122,132,141],"critical":[6],"yet":[7],"challenging":[8],"task":[9],"in":[10,131,163],"scientific":[11],"fields,":[12],"aiming":[13],"to":[14,30,40,70,80,173,188],"novel":[16],"molecular":[17,57,129],"structures":[18],"with":[19,193],"desired":[20],"property":[21,167],"profiles.":[22],"Significant":[23],"progress":[24],"has":[25],"been":[26],"made":[27],"by":[28,88],"resorting":[29],"generative":[31,42],"models":[32,202],"for":[33,73],"graphs.":[34],"However,":[35],"limited":[36],"attention":[37],"paid":[39],"hierarchical":[41,49,81,105,116,124],"models,":[43],"which":[44],"can":[45,185],"exploit":[46],"the":[47,56,84,89,103,112,149,180],"inherent":[48],"structure":[50,152],"(with":[51],"rich":[52],"semantic":[53],"information)":[54],"of":[55,63,91,115],"graphs":[58,130],"and":[59,119,166,201],"generate":[60],"complex":[61],"molecules":[62,191],"larger":[64,190],"size":[65],"that":[66,127,158,184],"we":[67,101],"shall":[68],"demonstrate":[69,157],"be":[71,186],"difficult":[72],"most":[74],"existing":[75],"models.":[76],"The":[77,199],"primary":[78],"challenge":[79],"generation":[82,90,106,165],"non-differentiable":[85],"issue":[86],"caused":[87],"intermediate":[92],"discrete":[93,109],"coarsened":[94,150],"graph":[95,151],"structures.":[96],"To":[97],"sidestep":[98],"this":[99],"issue,":[100],"cast":[102],"tricky":[104],"problem":[107],"over":[108],"spaces":[110],"as":[111],"reverse":[113],"process":[114],"representation":[117],"learning":[118],"propose":[120],"MolHF,":[121],"new":[123],"flow-based":[125,182],"model":[126,174,183,189],"generates":[128,138,145],"coarse-to-fine":[133],"manner.":[134],"Specifically,":[135],"MolHF":[136,159,178],"first":[137,181],"bonds":[139],"through":[140],"multi-scale":[142],"architecture,":[143],"then":[144],"atoms":[146],"based":[147],"on":[148],"at":[153,205],"each":[154],"scale.":[155],"We":[156],"achieves":[160],"state-of-the-art":[161],"performance":[162],"random":[164],"optimization,":[168],"implying":[169],"its":[170],"high":[171],"capacity":[172],"data":[175],"distribution.":[176],"Furthermore,":[177],"applied":[187],"(polymer)":[192],"more":[194],"than":[195],"100":[196],"heavy":[197],"atoms.":[198],"code":[200],"are":[203],"available":[204],"https://github.com/violet-sto/MolHF.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
