{"id":"https://openalex.org/W4283709555","doi":"https://doi.org/10.23919/mipro55190.2022.9803685","title":"Predicting RNA splicing branchpoints","display_name":"Predicting RNA splicing branchpoints","publication_year":2022,"publication_date":"2022-05-23","ids":{"openalex":"https://openalex.org/W4283709555","doi":"https://doi.org/10.23919/mipro55190.2022.9803685"},"language":"en","primary_location":{"id":"doi:10.23919/mipro55190.2022.9803685","is_oa":false,"landing_page_url":"https://doi.org/10.23919/mipro55190.2022.9803685","pdf_url":null,"source":{"id":"https://openalex.org/S4363605136","display_name":"2022 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022749223","display_name":"Antonio Jovanovic","orcid":null},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]}],"countries":["HR"],"is_corresponding":true,"raw_author_name":"Antonio Jovanovic","raw_affiliation_strings":["University of Osijek,Department of Mathematics,Osijek,Croatia","Department of Mathematics, University of Osijek, Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"University of Osijek,Department of Mathematics,Osijek,Croatia","institution_ids":["https://openalex.org/I51314090"]},{"raw_affiliation_string":"Department of Mathematics, University of Osijek, Osijek, Croatia","institution_ids":["https://openalex.org/I51314090"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062721538","display_name":"Israa Alqassem","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Israa Alqassem","raw_affiliation_strings":["Ludwig-Maximilians-Universit&#x00E4;t M&#x00FC;nchen,Gene Center,Munich,Germany"],"affiliations":[{"raw_affiliation_string":"Ludwig-Maximilians-Universit&#x00E4;t M&#x00FC;nchen,Gene Center,Munich,Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044892246","display_name":"Nathan Chappell","orcid":"https://orcid.org/0000-0001-6923-9990"},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]},{"id":"https://openalex.org/I4210133956","display_name":"Agricultural Institute Osijek","ror":"https://ror.org/02qdg4b08","country_code":"HR","type":"facility","lineage":["https://openalex.org/I4210133956"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Nathan Chappell","raw_affiliation_strings":["Mono Ltd.,Osijek,Croatia","Mono Ltd., Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"Mono Ltd.,Osijek,Croatia","institution_ids":["https://openalex.org/I4210133956","https://openalex.org/I51314090"]},{"raw_affiliation_string":"Mono Ltd., Osijek, Croatia","institution_ids":["https://openalex.org/I4210133956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055704933","display_name":"Stefan Canzar","orcid":"https://orcid.org/0000-0003-4719-8010"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Canzar","raw_affiliation_strings":["Ludwig-Maximilians-Universit&#x00E4;t M&#x00FC;nchen,Gene Center,Munich,Germany"],"affiliations":[{"raw_affiliation_string":"Ludwig-Maximilians-Universit&#x00E4;t M&#x00FC;nchen,Gene Center,Munich,Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036002844","display_name":"Domagoj Matijevi\u0107","orcid":"https://orcid.org/0000-0003-3390-9467"},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Domagoj Matijevic","raw_affiliation_strings":["University of Osijek,Department of Mathematics,Osijek,Croatia","Department of Mathematics, University of Osijek, Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"University of Osijek,Department of Mathematics,Osijek,Croatia","institution_ids":["https://openalex.org/I51314090"]},{"raw_affiliation_string":"Department of Mathematics, University of Osijek, Osijek, Croatia","institution_ids":["https://openalex.org/I51314090"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5022749223"],"corresponding_institution_ids":["https://openalex.org/I51314090"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09414557,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"383","last_page":"388"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.6793544888496399},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4945814311504364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48954424262046814},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4479163587093353},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17217493057250977},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17052972316741943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14079973101615906}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.6793544888496399},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4945814311504364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48954424262046814},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4479163587093353},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17217493057250977},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17052972316741943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14079973101615906}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.23919/mipro55190.2022.9803685","is_oa":false,"landing_page_url":"https://doi.org/10.23919/mipro55190.2022.9803685","pdf_url":null,"source":{"id":"https://openalex.org/S4363605136","display_name":"2022 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 45th Jubilee International Convention on Information, Communication and Electronic Technology (MIPRO)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W648786980","https://openalex.org/W1981963956","https://openalex.org/W2016589492","https://openalex.org/W2089891619","https://openalex.org/W2130942839","https://openalex.org/W2133564696","https://openalex.org/W2149096772","https://openalex.org/W2163570826","https://openalex.org/W2413340136","https://openalex.org/W2580355118","https://openalex.org/W2671644384","https://openalex.org/W2765584677","https://openalex.org/W2799994822","https://openalex.org/W2901546682","https://openalex.org/W2909194804","https://openalex.org/W2951364430","https://openalex.org/W4255732721","https://openalex.org/W6621543089","https://openalex.org/W6679434410","https://openalex.org/W6679436768","https://openalex.org/W6725207838"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"RNA":[0,145],"splicing":[1],"is":[2,37,49],"a":[3,20,31,38,50,70,87,135],"process":[4],"where":[5],"introns":[6,107],"are":[7],"removed":[8],"from":[9,152],"pre-mRNA,":[10],"resulting":[11],"in":[12,59,69,130],"mature":[13],"mRNA.":[14],"It":[15],"requires":[16],"three":[17,153],"main":[18],"signals,":[19],"donor":[21],"splice":[22,27],"site":[23,28,35],"(5\u2019ss),":[24],"an":[25,112],"acceptor":[26],"(3\u2019ss)":[29],"and":[30,63,161],"branchpoint":[32,47,61],"(BP).":[33],"Splice":[34],"prediction":[36,44,48],"well-studied":[39],"problem":[40],"with":[41,111,134],"several":[42],"reliable":[43],"tools.":[45],"However,":[46],"harder":[51],"problem,":[52],"mainly":[53],"due":[54],"to":[55,117],"varying":[56],"nucleotide":[57],"motifs":[58],"the":[60,64,82,98,127,131,165,172],"area":[62],"existence":[65],"of":[66,106,115],"multiple":[67,109,169],"branch-points":[68],"single":[71,88],"intron.":[72,121],"An":[73],"RNN":[74],"based":[75],"approach":[76],"called":[77],"LaBranchoR":[78,132],"was":[79],"introduced":[80],"as":[81],"state-of-the-art":[83],"method":[84],"for":[85,90],"predicting":[86],"BP":[89],"each":[91],"3\u2019ss.":[92],"In":[93],"this":[94],"work,":[95],"we":[96,125],"explore":[97],"fact":[99],"that":[100,104,123],"previous":[101],"research":[102],"reported":[103],"95%":[105],"have":[108],"BPs":[110,119],"estimated":[113],"average":[114],"5":[116],"6":[118],"per":[120],"To":[122],"end,":[124],"extend":[126],"existing":[128],"encoder":[129],"network":[133],"PointerNetwork":[136],"decoder.":[137],"We":[138,157],"train":[139],"our":[140],"new":[141],"encoder-decoder":[142],"model,":[143],"named":[144],"PtrNets,":[146],"on":[147,171],"70-nucleotide-long":[148],"annotated":[149],"sequences":[150],"taken":[151],"publicly":[154],"available":[155],"datasets.":[156,174],"evaluate":[158],"its":[159],"accuracy":[160],"demonstrate":[162],"how":[163],"well":[164],"predictor":[166],"can":[167],"generate":[168],"branchpoints":[170],"given":[173]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
