{"id":"https://openalex.org/W3094714833","doi":"https://doi.org/10.23919/softcom50211.2020.9238187","title":"Genetic Algorithm Parametrization for Informed Exploration of Short Peptides Chemical Space","display_name":"Genetic Algorithm Parametrization for Informed Exploration of Short Peptides Chemical Space","publication_year":2020,"publication_date":"2020-09-17","ids":{"openalex":"https://openalex.org/W3094714833","doi":"https://doi.org/10.23919/softcom50211.2020.9238187","mag":"3094714833"},"language":"en","primary_location":{"id":"doi:10.23919/softcom50211.2020.9238187","is_oa":false,"landing_page_url":"https://doi.org/10.23919/softcom50211.2020.9238187","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 International Conference on Software, Telecommunications and Computer Networks (SoftCOM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040101364","display_name":"Erik Otovi\u0107","orcid":"https://orcid.org/0000-0001-5713-5879"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Erik Otovic","raw_affiliation_strings":["Faculty of Engineering, University of Rijeka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka","institution_ids":["https://openalex.org/I154347574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024925590","display_name":"Marko Njirjak","orcid":"https://orcid.org/0000-0003-0274-4866"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Marko Njirjak","raw_affiliation_strings":["Faculty of Engineering, University of Rijeka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka","institution_ids":["https://openalex.org/I154347574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008036517","display_name":"Ivana \u017du\u017ei\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Ivana Zuzic","raw_affiliation_strings":["Faculty of Engineering, University of Rijeka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka","institution_ids":["https://openalex.org/I154347574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090050853","display_name":"Daniela Kalafatovi\u0107","orcid":"https://orcid.org/0000-0002-9685-1162"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Daniela Kalafatovic","raw_affiliation_strings":["Center for Artificial Intelligence and Cybersecurity, University of Rijeka","University of Rijeka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence and Cybersecurity, University of Rijeka","institution_ids":["https://openalex.org/I154347574"]},{"raw_affiliation_string":"University of Rijeka","institution_ids":["https://openalex.org/I154347574"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088320075","display_name":"Goran Mau\u0161a","orcid":"https://orcid.org/0000-0002-0643-4577"},"institutions":[{"id":"https://openalex.org/I154347574","display_name":"University of Rijeka","ror":"https://ror.org/05r8dqr10","country_code":"HR","type":"education","lineage":["https://openalex.org/I154347574"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Goran Mausa","raw_affiliation_strings":["Center for Artificial Intelligence and Cybersecurity, University of Rijeka","Faculty of Engineering, University of Rijeka"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence and Cybersecurity, University of Rijeka","institution_ids":["https://openalex.org/I154347574"]},{"raw_affiliation_string":"Faculty of Engineering, University of Rijeka","institution_ids":["https://openalex.org/I154347574"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I154347574"],"apc_list":null,"apc_paid":null,"fwci":0.6742,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63879957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.7168174982070923},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6229782104492188},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5644755363464355},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.5264782905578613},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5255447626113892},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.49455830454826355},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.4890785813331604},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4717741012573242},{"id":"https://openalex.org/keywords/parametrization","display_name":"Parametrization (atmospheric modeling)","score":0.4542338252067566},{"id":"https://openalex.org/keywords/cover","display_name":"Cover (algebra)","score":0.42036139965057373},{"id":"https://openalex.org/keywords/space-exploration","display_name":"Space exploration","score":0.41653239727020264},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.4158726930618286},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.32954955101013184},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.27572715282440186},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19671902060508728},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1726371943950653},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13536196947097778},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.11824741959571838},{"id":"https://openalex.org/keywords/aerospace-engineering","display_name":"Aerospace engineering","score":0.10039812326431274}],"concepts":[{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.7168174982070923},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6229782104492188},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5644755363464355},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.5264782905578613},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5255447626113892},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.49455830454826355},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.4890785813331604},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4717741012573242},{"id":"https://openalex.org/C202887219","wikidata":"https://www.wikidata.org/wiki/Q3895221","display_name":"Parametrization (atmospheric modeling)","level":3,"score":0.4542338252067566},{"id":"https://openalex.org/C2780428219","wikidata":"https://www.wikidata.org/wiki/Q16952335","display_name":"Cover (algebra)","level":2,"score":0.42036139965057373},{"id":"https://openalex.org/C104060986","wikidata":"https://www.wikidata.org/wiki/Q180046","display_name":"Space exploration","level":2,"score":0.41653239727020264},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.4158726930618286},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.32954955101013184},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.27572715282440186},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19671902060508728},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1726371943950653},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13536196947097778},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.11824741959571838},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.10039812326431274},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C74902906","wikidata":"https://www.wikidata.org/wiki/Q1190858","display_name":"Radiative transfer","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.23919/softcom50211.2020.9238187","is_oa":false,"landing_page_url":"https://doi.org/10.23919/softcom50211.2020.9238187","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 International Conference on Software, Telecommunications and Computer Networks (SoftCOM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1702595188","https://openalex.org/W2126105956","https://openalex.org/W2908837618","https://openalex.org/W2914275007","https://openalex.org/W2940210866","https://openalex.org/W2990351990","https://openalex.org/W2998031109","https://openalex.org/W4210580908"],"related_works":["https://openalex.org/W3104258108","https://openalex.org/W1232705","https://openalex.org/W3042805","https://openalex.org/W8875889","https://openalex.org/W534652","https://openalex.org/W6720445","https://openalex.org/W5998737","https://openalex.org/W13117380","https://openalex.org/W4412413","https://openalex.org/W287040"],"abstract_inverted_index":{"Chemical":[0],"space":[1,47,103],"is":[2,89],"vast":[3],"and":[4,17,53,74],"its":[5],"exploration":[6,30,105],"by":[7,60,80],"hand-picking":[8],"chemical":[9,46],"compounds":[10],"with":[11],"desirable":[12],"features":[13],"can":[14,31],"appear":[15],"slow":[16],"demanding.":[18],"With":[19],"the":[20,23,62,67,70,90],"advancement":[21],"in":[22,51,104],"field":[24],"of":[25,48,69,76,86,101,106],"search":[26,102],"based":[27],"algorithms":[28],"such":[29],"be":[32],"rationally":[33],"controlled.":[34],"Our":[35],"goal":[36,59],"was":[37],"to":[38],"construct":[39],"a":[40],"genetic":[41],"algorithm":[42,65],"that":[43,97],"searches":[44],"through":[45,66],"short":[49],"peptides":[50],"intelligent":[52],"fast":[54],"manner.":[55],"We":[56],"achieved":[57],"our":[58],"adapting":[61],"multi-objective":[63],"NSGA-II":[64],"implementation":[68],"early":[71],"stopping":[72],"criterion":[73],"mitigation":[75],"possible":[77],"memory":[78],"issues":[79],"using":[81],"simulated":[82],"annealing.":[83],"The":[84],"contribution":[85],"this":[87],"paper":[88],"design":[91],"strategy":[92],"for":[93],"multiple":[94],"peptide":[95],"libraries":[96],"cover":[98],"greater":[99],"area":[100],"new":[107],"active":[108],"peptides.":[109]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
