{"id":"https://openalex.org/W3094898353","doi":"https://doi.org/10.23919/mipro48935.2020.9245440","title":"Drug screening with the Autodock Vina on a set of kinases without experimentally established structures","display_name":"Drug screening with the Autodock Vina on a set of kinases without experimentally established structures","publication_year":2020,"publication_date":"2020-09-28","ids":{"openalex":"https://openalex.org/W3094898353","doi":"https://doi.org/10.23919/mipro48935.2020.9245440","mag":"3094898353"},"language":"en","primary_location":{"id":"doi:10.23919/mipro48935.2020.9245440","is_oa":false,"landing_page_url":"https://doi.org/10.23919/mipro48935.2020.9245440","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://fulir.irb.hr/5432/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004893275","display_name":"Dra\u0161ko Tomi\u0107","orcid":"https://orcid.org/0000-0002-8784-7081"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"D. Tomic","raw_affiliation_strings":["Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia"],"affiliations":[{"raw_affiliation_string":"Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082491978","display_name":"Davor Davidovi\u0107","orcid":"https://orcid.org/0000-0003-2649-9236"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Davidovic","raw_affiliation_strings":["Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia"],"affiliations":[{"raw_affiliation_string":"Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058454374","display_name":"Vladimir Jan\u0111el","orcid":null},"institutions":[{"id":"https://openalex.org/I138937732","display_name":"University Hospital Centre Zagreb","ror":"https://ror.org/00r9vb833","country_code":"HR","type":"healthcare","lineage":["https://openalex.org/I138937732"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"V. Jandel","raw_affiliation_strings":["KBC Zagreb,Department of Gynecological Surgery and Urology,Zagreb,Croatia"],"affiliations":[{"raw_affiliation_string":"KBC Zagreb,Department of Gynecological Surgery and Urology,Zagreb,Croatia","institution_ids":["https://openalex.org/I138937732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036535256","display_name":"Josip Mesari\u0107","orcid":"https://orcid.org/0000-0001-7895-7660"},"institutions":[{"id":"https://openalex.org/I4390039327","display_name":"Faculty of Electrical Engineering and Computing in Zagreb","ror":"https://ror.org/04e90ca47","country_code":null,"type":"education","lineage":["https://openalex.org/I181343428","https://openalex.org/I4390039327"]},{"id":"https://openalex.org/I181343428","display_name":"University of Zagreb","ror":"https://ror.org/00mv6sv71","country_code":"HR","type":"education","lineage":["https://openalex.org/I181343428"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"J. Mesaric","raw_affiliation_strings":["Faculty of electrical engineering and computing,Zagreb,Croatia","Faculty of electrical engineering and computing, Zagreb, Croatia"],"affiliations":[{"raw_affiliation_string":"Faculty of electrical engineering and computing,Zagreb,Croatia","institution_ids":["https://openalex.org/I181343428"]},{"raw_affiliation_string":"Faculty of electrical engineering and computing, Zagreb, Croatia","institution_ids":["https://openalex.org/I181343428","https://openalex.org/I4390039327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060739808","display_name":"Karolj Skala","orcid":"https://orcid.org/0000-0003-3325-2119"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. Skala","raw_affiliation_strings":["Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia"],"affiliations":[{"raw_affiliation_string":"Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009325271","display_name":"Tomislav Lipi\u0107","orcid":"https://orcid.org/0000-0002-8037-8198"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Lipic","raw_affiliation_strings":["Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia"],"affiliations":[{"raw_affiliation_string":"Institut Ru&#x0111;er Bo&#x0161;kovi&#x0107;,Centre for Informatics and Computing,Zagreb,Croatia","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5004893275"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.17463076,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"43","issue":null,"first_page":"377","last_page":"383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8840916752815247},{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.8267521262168884},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5682183504104614},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5643631815910339},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.4933234751224518},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4699181616306305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4368855059146881},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.424900621175766},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.334822416305542},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.20159825682640076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16936171054840088},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.16012245416641235},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.15799033641815186}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8840916752815247},{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.8267521262168884},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5682183504104614},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5643631815910339},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.4933234751224518},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4699181616306305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4368855059146881},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.424900621175766},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.334822416305542},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.20159825682640076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16936171054840088},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.16012245416641235},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.15799033641815186},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.23919/mipro48935.2020.9245440","is_oa":false,"landing_page_url":"https://doi.org/10.23919/mipro48935.2020.9245440","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 43rd International Convention on Information, Communication and Electronic Technology (MIPRO)","raw_type":"proceedings-article"},{"id":"pmh:oai:fulir.irb.hr:5432","is_oa":true,"landing_page_url":"http://fulir.irb.hr/5432/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400095","display_name":"Institutional Repository  of the Ru\u0111er Bo\u0161kovi\u0107 Institute (Ru\u0111er Bo\u0161kovi\u0107 Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123216","host_organization_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","host_organization_lineage":["https://openalex.org/I4210123216"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:fulir.irb.hr:5432","is_oa":true,"landing_page_url":"http://fulir.irb.hr/5432/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400095","display_name":"Institutional Repository  of the Ru\u0111er Bo\u0161kovi\u0107 Institute (Ru\u0111er Bo\u0161kovi\u0107 Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123216","host_organization_name":"Ru\u0111er Bo\u0161kovi\u0107 Institute","host_organization_lineage":["https://openalex.org/I4210123216"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W19471559","https://openalex.org/W1964976889","https://openalex.org/W1975147762","https://openalex.org/W1986240377","https://openalex.org/W2004297918","https://openalex.org/W2031168104","https://openalex.org/W2031390939","https://openalex.org/W2039240409","https://openalex.org/W2039509403","https://openalex.org/W2095549020","https://openalex.org/W2096465161","https://openalex.org/W2096541451","https://openalex.org/W2103034037","https://openalex.org/W2105668062","https://openalex.org/W2118387386","https://openalex.org/W2132629607","https://openalex.org/W2134967712","https://openalex.org/W2140673705","https://openalex.org/W2147472674","https://openalex.org/W2159614853","https://openalex.org/W2169678694","https://openalex.org/W2266013672","https://openalex.org/W2301595689","https://openalex.org/W2325334191","https://openalex.org/W2334483166","https://openalex.org/W2336040088","https://openalex.org/W2557684166","https://openalex.org/W2571978672","https://openalex.org/W2578119541","https://openalex.org/W2888211112","https://openalex.org/W2893518023","https://openalex.org/W2894573731","https://openalex.org/W2912171584","https://openalex.org/W2952635193","https://openalex.org/W2980603689","https://openalex.org/W2989685001","https://openalex.org/W4234714728","https://openalex.org/W6600778564","https://openalex.org/W7075630220"],"related_works":["https://openalex.org/W2089188080","https://openalex.org/W2059230675","https://openalex.org/W2336040088","https://openalex.org/W2109587698","https://openalex.org/W2326230513","https://openalex.org/W3185720802","https://openalex.org/W2376003823","https://openalex.org/W4232045916","https://openalex.org/W4245963358","https://openalex.org/W3200294295"],"abstract_inverted_index":{"Virtual":[0],"drug":[1,59,111,132],"screening":[2,112,133],"is":[3,43,60],"one":[4,21],"of":[5,40,53,67,95,103,116,142],"the":[6,27,37,56,64,71,93,101,104,135,147,158],"most":[7,57],"widely":[8],"used":[9,163],"approaches":[10],"for":[11],"finding":[12,55],"new":[13],"drugs":[14],"candidates.":[15],"The":[16,153],"process":[17],"consists":[18],"in":[19,91,108,165],"selecting":[20],"or":[22],"more":[23],"chemical":[24,41,87],"compounds":[25,42],"with":[26,86,134],"highest":[28],"binding":[29,83],"free":[30,84],"energy":[31],"to":[32,48,79,99],"target":[33],"proteins.":[34],"Given":[35],"that":[36,118,157],"empirical":[38],"space":[39],"extremely":[44],"large":[45,140],"and":[46],"estimated":[47],"has":[49],"over":[50],"50":[51],"millions":[52],"them,":[54],"effective":[58],"computationally":[61],"challenging.":[62],"Furthermore,":[63],"vast":[65],"majority":[66],"proteins":[68,117],"still":[69],"lack":[70],"experimentally":[72,122],"obtained":[73,155],"3D":[74],"structures,":[75],"making":[76],"it":[77],"hard":[78],"accurately":[80],"calculate":[81],"their":[82],"energies":[85],"compounds.":[88],"With":[89],"this":[90],"mind,":[92],"aim":[94],"our":[96],"study":[97],"was":[98],"investigate":[100],"accuracy":[102],"Autodock":[105,136,159],"Vina":[106,137,160],"program":[107],"a":[109,114,130,139],"virtual":[110,131],"on":[113,138],"set":[115,141],"do":[119,126],"not":[120],"have":[121],"determined":[123],"structures.":[124],"To":[125],"this,":[127],"we":[128],"performed":[129],"drug-kinase":[143],"pairs":[144],"taken":[145],"from":[146],"IDG-Dream":[148],"Drug-Kinase":[149],"Binding":[150],"Prediction":[151],"Challenge.":[152],"results":[154],"show":[156],"can":[161],"be":[162],"effectively":[164],"such":[166],"unstructured":[167],"environments.":[168]},"counts_by_year":[],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
