{"id":"https://openalex.org/W3022518899","doi":"https://doi.org/10.23919/fruct48808.2020.9087455","title":"Different Approaches for Automatic Nucleus Image Segmentation in Fluorescent in situ Hybridization (FISH) Analysis for HER2 Status Assesment","display_name":"Different Approaches for Automatic Nucleus Image Segmentation in Fluorescent in situ Hybridization (FISH) Analysis for HER2 Status Assesment","publication_year":2020,"publication_date":"2020-04-01","ids":{"openalex":"https://openalex.org/W3022518899","doi":"https://doi.org/10.23919/fruct48808.2020.9087455","mag":"3022518899"},"language":"en","primary_location":{"id":"doi:10.23919/fruct48808.2020.9087455","is_oa":false,"landing_page_url":"https://doi.org/10.23919/fruct48808.2020.9087455","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 26th Conference of Open Innovations Association (FRUCT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doaj.org/article/48ae6c39f6f341f4b6ca84be12b17c1d","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030285612","display_name":"Denis Makhov","orcid":"https://orcid.org/0000-0003-3794-186X"},"institutions":[{"id":"https://openalex.org/I177537411","display_name":"Bauman Moscow State Technical University","ror":"https://ror.org/00pb8h375","country_code":"RU","type":"education","lineage":["https://openalex.org/I177537411"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Denis Makhov","raw_affiliation_strings":["Bauman Moscow State Technical University,Moscow,Russian Federation","Bauman Moscow State Technical University, Moscow, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Bauman Moscow State Technical University,Moscow,Russian Federation","institution_ids":["https://openalex.org/I177537411"]},{"raw_affiliation_string":"Bauman Moscow State Technical University, Moscow, Russian Federation","institution_ids":["https://openalex.org/I177537411"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012563871","display_name":"A. V. Samorodov","orcid":"https://orcid.org/0000-0003-3301-2561"},"institutions":[{"id":"https://openalex.org/I177537411","display_name":"Bauman Moscow State Technical University","ror":"https://ror.org/00pb8h375","country_code":"RU","type":"education","lineage":["https://openalex.org/I177537411"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Andrey Samorodov","raw_affiliation_strings":["Bauman Moscow State Technical University,Moscow,Russian Federation","Bauman Moscow State Technical University, Moscow, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Bauman Moscow State Technical University,Moscow,Russian Federation","institution_ids":["https://openalex.org/I177537411"]},{"raw_affiliation_string":"Bauman Moscow State Technical University, Moscow, Russian Federation","institution_ids":["https://openalex.org/I177537411"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032399668","display_name":"\u0415. \u041d. \u0421\u043b\u0430\u0432\u043d\u043e\u0432\u0430","orcid":"https://orcid.org/0000-0003-2307-4355"},"institutions":[{"id":"https://openalex.org/I4210139937","display_name":"P.A. Hertzen Moscow Oncology Research Institute","ror":"https://ror.org/04rbazs75","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210117042","https://openalex.org/I4210139937"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Elena Slavnova","raw_affiliation_strings":["P. Hertsen Moscow Oncology Research Institute,Moscow,Russian Federation","P. Hertsen Moscow Oncology Research Institute, Moscow, Russian Federation"],"affiliations":[{"raw_affiliation_string":"P. Hertsen Moscow Oncology Research Institute,Moscow,Russian Federation","institution_ids":["https://openalex.org/I4210139937"]},{"raw_affiliation_string":"P. Hertsen Moscow Oncology Research Institute, Moscow, Russian Federation","institution_ids":["https://openalex.org/I4210139937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030285612"],"corresponding_institution_ids":["https://openalex.org/I177537411"],"apc_list":null,"apc_paid":null,"fwci":0.3339,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.59856325,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"270","last_page":"277"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10755","display_name":"HER2/EGFR in Cancer Research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10755","display_name":"HER2/EGFR in Cancer Research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5993269085884094},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5952678918838501},{"id":"https://openalex.org/keywords/fluorescence-in-situ-hybridization","display_name":"Fluorescence in situ hybridization","score":0.547836422920227},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.5409084558486938},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.530758798122406},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5128951072692871},{"id":"https://openalex.org/keywords/fluorophore","display_name":"Fluorophore","score":0.4733681380748749},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46124452352523804},{"id":"https://openalex.org/keywords/nucleus","display_name":"Nucleus","score":0.4505699574947357},{"id":"https://openalex.org/keywords/in-situ-hybridization","display_name":"In situ hybridization","score":0.43317413330078125},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4290284514427185},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.33436378836631775},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.31595689058303833},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2661937177181244},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21664544939994812},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1907871961593628},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1655130386352539},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1516190767288208},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11351412534713745},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09582856297492981},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.0925266444683075}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5993269085884094},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5952678918838501},{"id":"https://openalex.org/C2777542201","wikidata":"https://www.wikidata.org/wiki/Q1336182","display_name":"Fluorescence in situ hybridization","level":4,"score":0.547836422920227},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.5409084558486938},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.530758798122406},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5128951072692871},{"id":"https://openalex.org/C2778617687","wikidata":"https://www.wikidata.org/wiki/Q2448456","display_name":"Fluorophore","level":3,"score":0.4733681380748749},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46124452352523804},{"id":"https://openalex.org/C2780723820","wikidata":"https://www.wikidata.org/wiki/Q1934178","display_name":"Nucleus","level":2,"score":0.4505699574947357},{"id":"https://openalex.org/C81439078","wikidata":"https://www.wikidata.org/wiki/Q2304142","display_name":"In situ hybridization","level":4,"score":0.43317413330078125},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4290284514427185},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.33436378836631775},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.31595689058303833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2661937177181244},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21664544939994812},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1907871961593628},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1655130386352539},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1516190767288208},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11351412534713745},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09582856297492981},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.0925266444683075},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.23919/fruct48808.2020.9087455","is_oa":false,"landing_page_url":"https://doi.org/10.23919/fruct48808.2020.9087455","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 26th Conference of Open Innovations Association (FRUCT)","raw_type":"proceedings-article"},{"id":"pmh:oai:doaj.org/article:48ae6c39f6f341f4b6ca84be12b17c1d","is_oa":true,"landing_page_url":"https://doaj.org/article/48ae6c39f6f341f4b6ca84be12b17c1d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the XXth Conference of Open Innovations Association FRUCT, Vol 26, Iss 1, Pp 270-277 (2020)","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:doaj.org/article:48ae6c39f6f341f4b6ca84be12b17c1d","is_oa":true,"landing_page_url":"https://doaj.org/article/48ae6c39f6f341f4b6ca84be12b17c1d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the XXth Conference of Open Innovations Association FRUCT, Vol 26, Iss 1, Pp 270-277 (2020)","raw_type":"article"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W18543265","https://openalex.org/W1901129140","https://openalex.org/W2070057204","https://openalex.org/W2512980660","https://openalex.org/W2617667181","https://openalex.org/W2807987617","https://openalex.org/W2889646458","https://openalex.org/W2922228277","https://openalex.org/W2951594447","https://openalex.org/W6639824700"],"related_works":["https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2417696084","https://openalex.org/W2368782778","https://openalex.org/W2087830269","https://openalex.org/W3106281778","https://openalex.org/W2003643616","https://openalex.org/W638612878","https://openalex.org/W2037370208","https://openalex.org/W1968072793"],"abstract_inverted_index":{"According":[0],"to":[1,29,34,112,116,150],"American":[2],"Cancer":[3],"Society":[4],"breast":[5,36],"cancer":[6,11,37],"is":[7,27,42,88,95,108],"the":[8,51,125,147,194],"most":[9,16,69,91],"common":[10],"type":[12],"in":[13,83],"women.":[14],"For":[15],"effective":[17],"treatment":[18],"choice":[19],"and":[20,62,106,121,144],"patients'":[21],"state":[22],"of":[23,54,73,78,100,124,146,174,201],"health":[24],"prediction":[25],"it":[26],"necessary":[28],"make":[30],"a":[31],"differential":[32],"diagnosis":[33],"determine":[35],"subtype.":[38],"The":[39,168,188],"tumor":[40],"subtype":[41],"determined":[43],"by":[44,97,104],"immunohistochemical":[45],"or":[46],"immunocytochemical":[47],"studies,":[48],"which":[49],"evaluate":[50],"expression":[52,81],"levels":[53],"steroid":[55],"hormone":[56],"receptors,":[57],"proliferative":[58],"protein":[59],"Ki":[60],"-67,":[61],"oncoprotein":[63],"CerbB-2":[64,80],"(HER2/neu).":[65],"HER2-positive":[66],"subtypes":[67],"are":[68,166],"adverse":[70],"(about":[71],"25-30%":[72],"all":[74],"cases).":[75],"In":[76,90,153],"case":[77],"indefinite":[79],"fluorescence":[82],"situ":[84],"hybridization":[85],"(FISH)":[86],"investigation":[87],"utilized.":[89],"cases,":[92],"this":[93,154],"study":[94],"held":[96],"visual":[98],"estimation":[99],"fluorescent":[101,176],"image":[102,169],"parameters":[103],"pathologist":[105],"thus":[107],"subjective.":[109],"We":[110],"need":[111],"employ":[113],"automatization":[114,130],"techniques":[115],"decrease":[117],"human":[118],"factor":[119],"impact":[120],"increase":[122],"reproducibility":[123],"analysis":[126,129],"result.":[127],"FISH":[128],"for":[131,157,171,184],"HER2":[132],"amplification":[133],"can":[134],"be":[135],"divided":[136],"into":[137],"three":[138],"tasks:":[139],"nucleus":[140,158],"segmentation,":[141],"signal":[142],"detection":[143],"presentation":[145],"results":[148,156],"according":[149],"ASCO/CAP":[151],"recommendations.":[152],"article":[155],"segmentation":[159],"task":[160],"using":[161,193],"different":[162],"machine":[163],"learning":[164],"algorithms":[165],"presented.":[167],"database":[170],"investigations":[172],"consisted":[173],"RGB":[175],"images,":[177],"as":[178,180],"well":[179],"gray":[181],"scale":[182],"images":[183,200],"each":[185],"individual":[186,202],"fluorophore.":[187],"best":[189],"result":[190],"was":[191],"achieved":[192],"random":[195],"forest":[196],"algorithm":[197],"on":[198],"gray-scale":[199],"fluorophores.":[203]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
