{"id":"https://openalex.org/W4206105432","doi":"https://doi.org/10.23919/eusipco54536.2021.9616137","title":"A Deep Embedded Framework for Spitzoid Neoplasm Classification Using DNA Methylation Data","display_name":"A Deep Embedded Framework for Spitzoid Neoplasm Classification Using DNA Methylation Data","publication_year":2021,"publication_date":"2021-08-23","ids":{"openalex":"https://openalex.org/W4206105432","doi":"https://doi.org/10.23919/eusipco54536.2021.9616137"},"language":"en","primary_location":{"id":"doi:10.23919/eusipco54536.2021.9616137","is_oa":false,"landing_page_url":"https://doi.org/10.23919/eusipco54536.2021.9616137","pdf_url":null,"source":{"id":"https://openalex.org/S4363607854","display_name":"2021 29th European Signal Processing Conference (EUSIPCO)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 29th European Signal Processing Conference (EUSIPCO)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10251/179966","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067714499","display_name":"Roc\u00edo del Amor","orcid":"https://orcid.org/0000-0002-5342-2093"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Rocio Del Amor","raw_affiliation_strings":["Instituto de Investigaci\u00f3n e Innovaci\u00f3n en Bioingenier\u00eda, I3B, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Investigaci\u00f3n e Innovaci\u00f3n en Bioingenier\u00eda, I3B, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019517367","display_name":"Adri\u00e1n Colomer","orcid":"https://orcid.org/0000-0002-7616-6029"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Adrian Colomer","raw_affiliation_strings":["Instituto de Investigaci\u00f3n e Innovaci\u00f3n en Bioingenier\u00eda, I3B, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Investigaci\u00f3n e Innovaci\u00f3n en Bioingenier\u00eda, I3B, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030244533","display_name":"Carlos Monteagudo","orcid":"https://orcid.org/0000-0002-9381-9976"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210094406","display_name":"Hospital Cl\u00ednico Universitario de Valencia","ror":"https://ror.org/00hpnj894","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210094406"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Monteagudo","raw_affiliation_strings":["Pathology Department, Hospital Cl\u00ednico Universitario de Valencia, Universidad de Valencia, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Pathology Department, Hospital Cl\u00ednico Universitario de Valencia, Universidad de Valencia, Valencia, Spain","institution_ids":["https://openalex.org/I4210094406","https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090538950","display_name":"Mar\u00eda Jos\u00e9 Garz\u00f3n","orcid":"https://orcid.org/0000-0002-9136-1236"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria Jose Garzon","raw_affiliation_strings":["Consorcio Centro de Investigaci\u00f3n Biom\u00e9dica en Red, Instituto de Salud Carlos III, Instituto de Investigaci\u00f3n Sanitaria INCLIVA, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Consorcio Centro de Investigaci\u00f3n Biom\u00e9dica en Red, Instituto de Salud Carlos III, Instituto de Investigaci\u00f3n Sanitaria INCLIVA, Valencia, Spain","institution_ids":["https://openalex.org/I4210115082","https://openalex.org/I2801357902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023676344","display_name":"Jose Luis Garc\u00eda\u2010Gim\u00e9nez","orcid":"https://orcid.org/0000-0001-7547-7872"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jose Luis Garcia-Gimenez","raw_affiliation_strings":["Bioinformatics and Computational Diagnostics Unit EpiDisease S.L., Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Diagnostics Unit EpiDisease S.L., Valencia, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043316752","display_name":"Valery Naranjo","orcid":"https://orcid.org/0000-0002-0181-3412"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Valery Naranjo","raw_affiliation_strings":["Instituto de Investigaci\u00f3n e Innovaci\u00f3n en Bioingenier\u00eda, I3B, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Investigaci\u00f3n e Innovaci\u00f3n en Bioingenier\u00eda, I3B, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5067714499"],"corresponding_institution_ids":["https://openalex.org/I60053951"],"apc_list":null,"apc_paid":null,"fwci":0.4058,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.61818182,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1271","last_page":"1275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.7970105409622192},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6643863916397095},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6526086330413818},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.5970367193222046},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5551478862762451},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.49084144830703735},{"id":"https://openalex.org/keywords/subspace-topology","display_name":"Subspace topology","score":0.47103410959243774},{"id":"https://openalex.org/keywords/dnam","display_name":"dNaM","score":0.4578704833984375},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43123236298561096},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.4208652675151825},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38166624307632446},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1778334379196167},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1062394380569458}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.7970105409622192},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6643863916397095},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6526086330413818},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.5970367193222046},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5551478862762451},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.49084144830703735},{"id":"https://openalex.org/C32834561","wikidata":"https://www.wikidata.org/wiki/Q660730","display_name":"Subspace topology","level":2,"score":0.47103410959243774},{"id":"https://openalex.org/C2775921022","wikidata":"https://www.wikidata.org/wiki/Q25104749","display_name":"dNaM","level":5,"score":0.4578704833984375},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43123236298561096},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.4208652675151825},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38166624307632446},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1778334379196167},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1062394380569458},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.23919/eusipco54536.2021.9616137","is_oa":false,"landing_page_url":"https://doi.org/10.23919/eusipco54536.2021.9616137","pdf_url":null,"source":{"id":"https://openalex.org/S4363607854","display_name":"2021 29th European Signal Processing Conference (EUSIPCO)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 29th European Signal Processing Conference (EUSIPCO)","raw_type":"proceedings-article"},{"id":"pmh:oai:riunet.upv.es:10251/179966","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/179966","pdf_url":null,"source":{"id":"https://openalex.org/S4306400639","display_name":"RiuNet (Universitat Polit\u00e8cnica de Val\u00e8ncia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:riunet.upv.es:10251/179966","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/179966","pdf_url":null,"source":{"id":"https://openalex.org/S4306400639","display_name":"RiuNet (Universitat Polit\u00e8cnica de Val\u00e8ncia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3875748329","display_name":null,"funder_award_id":"European Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4292344142","display_name":null,"funder_award_id":"860627","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G453067482","display_name":null,"funder_award_id":"014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G495392292","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5544519660","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G5634946813","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6660225447","display_name":null,"funder_award_id":"co-financed","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6870533126","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7935052705","display_name":null,"funder_award_id":"DGX A100","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G8538941428","display_name":null,"funder_award_id":"Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W202641607","https://openalex.org/W1552282019","https://openalex.org/W1965262464","https://openalex.org/W1979362779","https://openalex.org/W1997650822","https://openalex.org/W2152315800","https://openalex.org/W2286378748","https://openalex.org/W2288707153","https://openalex.org/W2410426698","https://openalex.org/W2586840324","https://openalex.org/W2605077517","https://openalex.org/W2616823333","https://openalex.org/W2884851420","https://openalex.org/W2895120143","https://openalex.org/W2901464810","https://openalex.org/W2904937257","https://openalex.org/W2911445672","https://openalex.org/W2951029718","https://openalex.org/W2964074409","https://openalex.org/W2990633537","https://openalex.org/W2994893650","https://openalex.org/W3132720877","https://openalex.org/W3191003990","https://openalex.org/W6685380521","https://openalex.org/W6742297177","https://openalex.org/W6754773464"],"related_works":["https://openalex.org/W2996570328","https://openalex.org/W4304811496","https://openalex.org/W4323537959","https://openalex.org/W4401928073","https://openalex.org/W3044392860","https://openalex.org/W4386303601","https://openalex.org/W4291019124","https://openalex.org/W4310873165","https://openalex.org/W2355395139","https://openalex.org/W4285596704"],"abstract_inverted_index":{"Spitzoid":[0,47],"melanocytic":[1],"tumors":[2],"(SMT)":[3],"are":[4],"a":[5,11,21,57,64,71,100,126],"group":[6],"of":[7,33,120,133],"neoplasms":[8,48],"that":[9,25,87],"represent":[10],"formidable":[12],"diagnostic":[13],"challenge":[14],"for":[15,60,129],"dermatopathologists.":[16],"DNA":[17],"methylation":[18],"(DNAm)":[19],"is":[20,92,139],"well-defined":[22],"epigenetic":[23],"factor":[24],"has":[26],"an":[27,54],"important":[28],"role":[29],"in":[30,97,103,145],"the":[31,46,80,84,88,104,109,121,130,141],"development":[32],"these":[34],"lesions.":[35],"In":[36],"this":[37],"work,":[38],"we":[39,69,124],"propose":[40],"different":[41],"deep-learning-based":[42],"approaches":[43],"to":[44,78],"address":[45],"detection":[49,106],"from":[50],"DNAm.":[51],"We":[52],"use":[53,119],"autoencoder":[55,59],"and":[56],"variational":[58],"dimensionality":[61],"reduction":[62],"with":[63],"subsequently":[65],"supervised":[66],"classification.":[67],"Additionally,":[68,117],"present":[70,125],"deep":[72],"embedded":[73],"refined":[74],"clustering":[75],"algorithm":[76],"able":[77],"optimize":[79],"latent":[81],"space":[82],"at":[83],"same":[85],"time":[86],"non-supervised":[89],"classification":[90],"task":[91],"performed.":[93],"This":[94],"novel":[95],"approach":[96,128],"DNAm":[98],"supposes":[99],"step":[101],"forward":[102],"SMT":[105,146],"as":[107],"suggest":[108],"obtained":[110],"results":[111],"<tex":[112],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[113],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$\\mathbf{(acc":[114],"=0.9)}$</tex>":[115],".":[116],"making":[118],"resulting":[122],"model,":[123],"subspace-prototypical-based":[127],"prognostic":[131],"prediction":[132],"uncertain":[134],"malignant":[135],"potential":[136],"samples,":[137],"which":[138],"nowadays":[140],"hottest":[142],"open":[143],"area":[144],"detection.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
