{"id":"https://openalex.org/W2972531592","doi":"https://doi.org/10.23919/acc.2019.8814355","title":"Stochastic analysis of genetic feedback controllers to reprogram a pluripotency gene regulatory network","display_name":"Stochastic analysis of genetic feedback controllers to reprogram a pluripotency gene regulatory network","publication_year":2019,"publication_date":"2019-07-01","ids":{"openalex":"https://openalex.org/W2972531592","doi":"https://doi.org/10.23919/acc.2019.8814355","mag":"2972531592","pmid":"https://pubmed.ncbi.nlm.nih.gov/32103851"},"language":"en","primary_location":{"id":"doi:10.23919/acc.2019.8814355","is_oa":false,"landing_page_url":"https://doi.org/10.23919/acc.2019.8814355","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 American Control Conference (ACC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/1721.1/137959","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060796056","display_name":"Simone Bruno","orcid":"https://orcid.org/0000-0001-9235-8226"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simone Bruno","raw_affiliation_strings":["Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139","Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006656230","display_name":"M. Ali Al-Radhawi","orcid":"https://orcid.org/0000-0002-6761-4520"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Ali Al-Radhawi","raw_affiliation_strings":["Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139","Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068753451","display_name":"Eduardo D. Sontag","orcid":"https://orcid.org/0000-0001-8020-5783"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eduardo D. Sontag","raw_affiliation_strings":["Department of Electrical and Computer Engineering and Department of Bioengineering, Northeastern University, 805 Columbus Ave, Boston, MA 02115, USA","Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering and Department of Bioengineering, Northeastern University, 805 Columbus Ave, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, USA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036095256","display_name":"Domitilla Del Vecchio","orcid":"https://orcid.org/0000-0001-6472-8576"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Domitilla Del Vecchio","raw_affiliation_strings":["Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139","Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8375,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.76902729,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2019","issue":null,"first_page":"5089","last_page":"5096"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reprogramming","display_name":"Reprogramming","score":0.851134181022644},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.7449992895126343},{"id":"https://openalex.org/keywords/controller","display_name":"Controller (irrigation)","score":0.6125640869140625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6007923483848572},{"id":"https://openalex.org/keywords/induced-pluripotent-stem-cell","display_name":"Induced pluripotent stem cell","score":0.517082929611206},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4282695949077606},{"id":"https://openalex.org/keywords/stochastic-process","display_name":"Stochastic process","score":0.42074695229530334},{"id":"https://openalex.org/keywords/control-theory","display_name":"Control theory (sociology)","score":0.4159734845161438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34359851479530334},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.3039807677268982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2721860408782959},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25319361686706543},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1963241994380951},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16235408186912537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1238592267036438},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.0861453115940094},{"id":"https://openalex.org/keywords/embryonic-stem-cell","display_name":"Embryonic stem cell","score":0.07988584041595459}],"concepts":[{"id":"https://openalex.org/C77255625","wikidata":"https://www.wikidata.org/wiki/Q402093","display_name":"Reprogramming","level":3,"score":0.851134181022644},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.7449992895126343},{"id":"https://openalex.org/C203479927","wikidata":"https://www.wikidata.org/wiki/Q5165939","display_name":"Controller (irrigation)","level":2,"score":0.6125640869140625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6007923483848572},{"id":"https://openalex.org/C107459253","wikidata":"https://www.wikidata.org/wiki/Q674925","display_name":"Induced pluripotent stem cell","level":4,"score":0.517082929611206},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4282695949077606},{"id":"https://openalex.org/C8272713","wikidata":"https://www.wikidata.org/wiki/Q176737","display_name":"Stochastic process","level":2,"score":0.42074695229530334},{"id":"https://openalex.org/C47446073","wikidata":"https://www.wikidata.org/wiki/Q5165890","display_name":"Control theory (sociology)","level":3,"score":0.4159734845161438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34359851479530334},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.3039807677268982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2721860408782959},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25319361686706543},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1963241994380951},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16235408186912537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1238592267036438},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0861453115940094},{"id":"https://openalex.org/C145103041","wikidata":"https://www.wikidata.org/wiki/Q1151519","display_name":"Embryonic stem cell","level":3,"score":0.07988584041595459},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.23919/acc.2019.8814355","is_oa":false,"landing_page_url":"https://doi.org/10.23919/acc.2019.8814355","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 American Control Conference (ACC)","raw_type":"proceedings-article"},{"id":"pmid:32103851","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32103851","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the ... American Control Conference. American Control Conference","raw_type":null},{"id":"pmh:oai:dspace.mit.edu:1721.1/137959","is_oa":true,"landing_page_url":"https://hdl.handle.net/1721.1/137959","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:5983478","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7043063","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:dspace.mit.edu:1721.1/137959","is_oa":true,"landing_page_url":"https://hdl.handle.net/1721.1/137959","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G975098169","display_name":null,"funder_award_id":"R01EB024591","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W139824189","https://openalex.org/W240844920","https://openalex.org/W1973875954","https://openalex.org/W1978319180","https://openalex.org/W1991107962","https://openalex.org/W2045433402","https://openalex.org/W2057948280","https://openalex.org/W2061632247","https://openalex.org/W2065746091","https://openalex.org/W2068992774","https://openalex.org/W2096083625","https://openalex.org/W2100932663","https://openalex.org/W2107575419","https://openalex.org/W2108241558","https://openalex.org/W2125987139","https://openalex.org/W2152897367","https://openalex.org/W2160803964","https://openalex.org/W2167154952","https://openalex.org/W2171280873","https://openalex.org/W2171327609","https://openalex.org/W2186962916","https://openalex.org/W2206474190","https://openalex.org/W2223396607","https://openalex.org/W2570895165","https://openalex.org/W2774133205","https://openalex.org/W4211137119","https://openalex.org/W4300672336"],"related_works":["https://openalex.org/W1996368906","https://openalex.org/W2952987119","https://openalex.org/W2067094788","https://openalex.org/W3048804972","https://openalex.org/W3045986617","https://openalex.org/W2898925820","https://openalex.org/W2343803143","https://openalex.org/W3212874355","https://openalex.org/W3211784080","https://openalex.org/W2100045972"],"abstract_inverted_index":{"Cellular":[0],"reprogramming":[1,113,181],"is":[2,88,109,120],"traditionally":[3],"accomplished":[4],"through":[5],"an":[6],"open":[7],"loop":[8,61],"(OL)":[9],"control":[10,64,177],"approach,":[11,49],"wherein":[12,115],"key":[13],"transcription":[14],"factors":[15],"(TFs)":[16],"are":[17,94,102,191],"injected":[18],"in":[19,103,112,126,160],"cells":[20],"to":[21,38,43,68],"steer":[22],"the":[23,26,39,44,50,80,110,116,131,137,141,147,155,158,175,185,189],"state":[24],"of":[25,47,52,79,140,157],"pluripotency":[27],"(PL)":[28],"gene":[29,117],"regulatory":[30],"network":[31],"(GRN),":[32],"as":[33,107],"encoded":[34],"by":[35,96],"TFs":[36,53],"concentrations,":[37],"pluripotent":[40],"state.":[41],"Due":[42],"OL":[45],"nature":[46],"this":[48,70,127],"concentration":[51],"cannot":[54],"be":[55],"accurately":[56],"controlled.":[57],"Recently,":[58],"a":[59],"closed":[60],"(CL)":[62],"feedback":[63,148,176],"strategy":[65],"was":[66],"proposed":[67],"overcome":[69],"problem":[71],"with":[72,144],"promising":[73],"theoretical":[74],"results.":[75],"However,":[76],"previous":[77],"analyses":[78],"controller":[81,159,190],"were":[82],"based":[83],"on":[84],"deterministic":[85],"models.":[86],"It":[87],"well":[89],"known":[90],"that":[91,174],"cellular":[92],"systems":[93],"characterized":[95],"substantial":[97],"stochasticity,":[98],"especially":[99],"when":[100,183],"molecules":[101],"low":[104],"copy":[105,118],"number":[106,119],"it":[108],"case":[111],"problems":[114],"usually":[121],"one":[122],"or":[123],"two.":[124],"Hence,":[125],"paper,":[128],"we":[129],"analyze":[130],"Chemical":[132],"Master":[133],"Equation":[134],"(CME)":[135],"for":[136],"reaction":[138],"model":[139],"PL":[142,186],"GRN":[143,187],"and":[145,152,188],"without":[146],"controller.":[149],"We":[150],"computationally":[151],"analytically":[153],"investigate":[154],"performance":[156],"biologically":[161],"relevant":[162],"parameter":[163],"regimes":[164],"where":[165],"stochastic":[166],"effects":[167],"dictate":[168],"system":[169],"dynamics.":[170],"Our":[171],"results":[172],"indicate":[173],"approach":[178],"still":[179],"ensures":[180],"even":[182],"both":[184],"stochastic.":[192]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
