{"id":"https://openalex.org/W2592388150","doi":"https://doi.org/10.2390/biecoll-jib-2016-287","title":"Integrated Automatic Workflow for Phylogenetic Tree Analysis Using Public Access and Local Web Services","display_name":"Integrated Automatic Workflow for Phylogenetic Tree Analysis Using Public Access and Local Web Services","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2592388150","doi":"https://doi.org/10.2390/biecoll-jib-2016-287","mag":"2592388150","pmid":"https://pubmed.ncbi.nlm.nih.gov/28187423"},"language":"en","primary_location":{"id":"pmid:28187423","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28187423","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":"Journal Article"},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2016-287","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003545345","display_name":"Kasikrit Damkliang","orcid":"https://orcid.org/0000-0002-5342-7302"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Damkliang, Kasikrit","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017045899","display_name":"Pichaya Tandayya","orcid":"https://orcid.org/0000-0001-9454-8146"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tandayya, Pichaya","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041782321","display_name":"Unitsa Sangket","orcid":"https://orcid.org/0000-0002-1395-5063"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sangket, Unitsa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5091747704","display_name":"Ekawat Pasomsub","orcid":"https://orcid.org/0000-0002-4344-0490"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pasomsub, Ekawat","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1597,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.64027319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"13","issue":"1","first_page":"287","last_page":"287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8658044338226318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7520047426223755},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6542493104934692},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.49985742568969727},{"id":"https://openalex.org/keywords/bootstrapping","display_name":"Bootstrapping (finance)","score":0.4935649633407593},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.4562689960002899},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4406373202800751},{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.41850799322128296},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4148479104042053},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3799322843551636},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07575395703315735}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8658044338226318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7520047426223755},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6542493104934692},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.49985742568969727},{"id":"https://openalex.org/C207609745","wikidata":"https://www.wikidata.org/wiki/Q4944086","display_name":"Bootstrapping (finance)","level":2,"score":0.4935649633407593},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.4562689960002899},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4406373202800751},{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.41850799322128296},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4148479104042053},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3799322843551636},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07575395703315735},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"pmid:28187423","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28187423","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5431","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2017/5431/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=287","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2016-287","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2016-287","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2016-287","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2016-287","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5},{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2081035100","https://openalex.org/W1570794762","https://openalex.org/W2361805735","https://openalex.org/W1586229537","https://openalex.org/W2377329191","https://openalex.org/W2362663500","https://openalex.org/W4255811401","https://openalex.org/W2111842914","https://openalex.org/W2592388150","https://openalex.org/W4231242005"],"abstract_inverted_index":{"At":[0],"the":[1,41,78,94,138,166,194,210],"present,":[2],"coding":[3],"sequence":[4],"(CDS)":[5],"has":[6,163,168],"been":[7,22,164,169,175,224],"discovered":[8],"and":[9,17,24,56,62,107,132,140,147,171,218],"larger":[10],"CDS":[11,76],"is":[12,72,181],"being":[13],"revealed":[14],"frequently.":[15],"Approaches":[16],"related":[18],"tools":[19],"have":[20,174,223],"also":[21],"developed":[23],"upgraded":[25],"concurrently,":[26],"especially":[27],"for":[28,40,186],"phylogenetic":[29,42],"tree":[30,43,95,189],"analysis.":[31],"This":[32,197],"paper":[33,198],"proposes":[34,199],"an":[35,213],"integrated":[36,202],"automatic":[37,203],"Taverna":[38,156],"workflow":[39,70,82,92,159,162,204],"inferring":[44,96,187],"analysis":[45],"using":[46,137],"public":[47],"access":[48],"web":[49,67,128],"services":[50,129,222],"at":[51,226],"European":[52],"Bioinformatics":[53,60],"Institute":[54,58],"(EMBL-EBI)":[55],"Swiss":[57],"of":[59,75,112,193,216],"(SIB),":[61],"our":[63,118,227],"own":[64],"deployed":[65,133,225],"local":[66,127,221],"services.":[68],"The":[69,81,91,126,161],"input":[71],"a":[73,158,188,200],"set":[74],"in":[77,88],"Fasta":[79],"format.":[80],"supports":[83],"1,000":[84],"to":[85,155,209],"20,000":[86],"numbers":[87],"bootstrapping":[89,195],"replication.":[90],"performs":[93],"such":[97],"as":[98],"Parsimony":[99],"(PARS),":[100],"Distance":[101],"Matrix":[102],"-":[103],"Neighbor":[104],"Joining":[105],"(DIST-NJ),":[106],"Maximum":[108],"Likelihood":[109],"(ML)":[110],"algorithms":[111],"EMBOSS":[113],"PHYLIPNEW":[114],"package":[115],"based":[116],"on":[117],"proposed":[119],"Multiple":[120],"Sequence":[121],"Alignment":[122],"(MSA)":[123],"similarity":[124],"score.":[125],"are":[130,145],"implemented":[131],"into":[134],"two":[135],"types":[136],"Soaplab2":[139],"Apache":[141],"Axis2":[142],"deployment.":[143],"There":[144],"SOAP":[146],"Java":[148],"Web":[149],"Service":[150],"(JWS)":[151],"providing":[152],"WSDL":[153],"endpoints":[154],"Workbench,":[157],"manager.":[160],"validated,":[165],"performance":[167],"measured,":[170],"its":[172],"results":[173],"verified.":[176],"Our":[177],"workflow's":[178],"execution":[179],"time":[180],"less":[182],"than":[183],"ten":[184],"minutes":[185],"with":[190,212],"10,000":[191],"replicates":[192],"numbers.":[196],"new":[201],"which":[205],"will":[206],"be":[207],"beneficial":[208],"bioinformaticians":[211],"intermediate":[214],"level":[215],"knowledge":[217],"experiences.":[219],"All":[220],"portal":[228],"http://bioservices.sci.psu.ac.th.":[229]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
