{"id":"https://openalex.org/W2405957956","doi":"https://doi.org/10.2390/biecoll-jib-2015-275","title":"RetroMine, or how to provide in-depth retrospective studies from Medline in a glance: the hepcidin use-case","display_name":"RetroMine, or how to provide in-depth retrospective studies from Medline in a glance: the hepcidin use-case","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2405957956","doi":"https://doi.org/10.2390/biecoll-jib-2015-275","mag":"2405957956","pmid":"https://pubmed.ncbi.nlm.nih.gov/26673791"},"language":"en","primary_location":{"id":"pmid:26673791","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26673791","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2015-275","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016181822","display_name":"Bertrand Ameline de Cadeville","orcid":null},"institutions":[{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Ameline De Cadeville, Bertrand","raw_affiliation_strings":["Universit\u00e9 de Rennes"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Rennes","institution_ids":["https://openalex.org/I56067802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065821826","display_name":"Olivier Lor\u00e9al","orcid":"https://orcid.org/0000-0002-7428-3766"},"institutions":[{"id":"https://openalex.org/I4210138914","display_name":"Foie, M\u00e9tabolisme, Cancer","ror":"https://ror.org/03z69yv22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210138914","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Loreal, Olivier","raw_affiliation_strings":["Foie, m\u00e9tabolismes et cancer"],"affiliations":[{"raw_affiliation_string":"Foie, m\u00e9tabolismes et cancer","institution_ids":["https://openalex.org/I4210138914"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014204747","display_name":"Fouzia Moussouni-Marzolf","orcid":"https://orcid.org/0000-0003-4947-1279"},"institutions":[{"id":"https://openalex.org/I4210138914","display_name":"Foie, M\u00e9tabolisme, Cancer","ror":"https://ror.org/03z69yv22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210138914","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Moussouni-Marzolf, Fouzia","raw_affiliation_strings":["Foie, m\u00e9tabolismes et cancer"],"affiliations":[{"raw_affiliation_string":"Foie, m\u00e9tabolismes et cancer","institution_ids":["https://openalex.org/I4210138914"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016181822"],"corresponding_institution_ids":["https://openalex.org/I56067802"],"apc_list":null,"apc_paid":null,"fwci":0.1506,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.58800606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"12","issue":"3","first_page":"275","last_page":"275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10452","display_name":"Iron Metabolism and Disorders","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9544000029563904,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7451841831207275},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5965240001678467},{"id":"https://openalex.org/keywords/hepcidin","display_name":"Hepcidin","score":0.5843154191970825},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5378396511077881},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5360524654388428},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5078845620155334},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.45201241970062256},{"id":"https://openalex.org/keywords/dimension","display_name":"Dimension (graph theory)","score":0.41085830330848694},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3925132751464844},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18248310685157776},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.08133092522621155}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7451841831207275},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5965240001678467},{"id":"https://openalex.org/C2776768029","wikidata":"https://www.wikidata.org/wiki/Q14882371","display_name":"Hepcidin","level":3,"score":0.5843154191970825},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5378396511077881},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5360524654388428},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5078845620155334},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.45201241970062256},{"id":"https://openalex.org/C33676613","wikidata":"https://www.wikidata.org/wiki/Q13415176","display_name":"Dimension (graph theory)","level":2,"score":0.41085830330848694},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3925132751464844},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18248310685157776},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.08133092522621155},{"id":"https://openalex.org/C2776914184","wikidata":"https://www.wikidata.org/wiki/Q101991","display_name":"Inflammation","level":2,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064451","descriptor_name":"Hepcidins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064451","descriptor_name":"Hepcidins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064451","descriptor_name":"Hepcidins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064451","descriptor_name":"Hepcidins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064451","descriptor_name":"Hepcidins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064451","descriptor_name":"Hepcidins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:26673791","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26673791","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01228207v1","is_oa":false,"landing_page_url":"https://univ-rennes.hal.science/hal-01228207","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, 2015, 12 (3), pp.275. &#x27E8;10.2390/biecoll-jib-2015-275&#x27E9;","raw_type":"Journal articles"},{"id":"doi:10.2390/biecoll-jib-2015-275","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2015-275","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2015-275","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2015-275","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1446881214","https://openalex.org/W1761222131","https://openalex.org/W1761407949","https://openalex.org/W1980042430","https://openalex.org/W1994306321","https://openalex.org/W2023736097","https://openalex.org/W2025063713","https://openalex.org/W2037708841","https://openalex.org/W2049917711","https://openalex.org/W2052947212","https://openalex.org/W2064030835","https://openalex.org/W2094328375","https://openalex.org/W2097131275","https://openalex.org/W2098722636","https://openalex.org/W2101299013","https://openalex.org/W2104965688","https://openalex.org/W2109487646","https://openalex.org/W2111727122","https://openalex.org/W2120736575","https://openalex.org/W2127603354","https://openalex.org/W2130382251","https://openalex.org/W2131520733","https://openalex.org/W2137825728","https://openalex.org/W2139259976","https://openalex.org/W2147154106","https://openalex.org/W2161998284","https://openalex.org/W2162965868","https://openalex.org/W2168091548","https://openalex.org/W2170953709","https://openalex.org/W2916355958"],"related_works":["https://openalex.org/W3020922338","https://openalex.org/W3020369106","https://openalex.org/W2911853378","https://openalex.org/W2975520804","https://openalex.org/W4381952411","https://openalex.org/W2971502849","https://openalex.org/W3018781222","https://openalex.org/W3016427719","https://openalex.org/W3045979088","https://openalex.org/W2056799348"],"abstract_inverted_index":{"The":[0],"rapid":[1],"expansion":[2],"of":[3,11,26,48,92,98,116,131,172],"biomedical":[4],"literature":[5],"has":[6],"provoked":[7],"an":[8,85],"increased":[9],"development":[10],"advanced":[12],"text":[13],"mining":[14],"tools":[15,40],"to":[16,37,61,95,101,200],"rapidly":[17],"extract":[18],"relevant":[19,151],"events":[20,49,66,94,155,164],"from":[21,165],"the":[22,89,96,118,166,205],"continuously":[23],"increasing":[24],"amount":[25,174],"knowledge":[27,111,120,168],"published":[28,74,93,110,156],"periodically":[29,109],"in":[30],"PubMed.":[31],"However,":[32],"bioinvestigators":[33],"are":[34],"still":[35],"reluctant":[36],"use":[38],"these":[39],"for":[41,77,112,159],"two":[42],"reasons:":[43],"i)":[44],"a":[45,54,123,129,140,170,183,191,193],"large":[46],"volume":[47,58],"is":[50,59,127,175,180,196],"often":[51],"extracted":[52],"upon":[53],"query,":[55,125],"and":[56,63,70,105,135,145,149,154],"this":[57,81],"hard":[60],"manage,":[62],"ii)":[64],"background":[65,133,148,163],"dominate":[67],"search":[68],"results":[69],"overshadow":[71],"more":[72,107],"pertinent":[73,108],"information,":[75,137],"especially":[76],"domain":[78],"experts.":[79],"In":[80],"paper,":[82],"we":[83,138],"propose":[84,139],"approach":[86],"that":[87,142,195],"incorporates":[88,143],"temporal":[90],"dimension":[91],"process":[97],"information":[99,134],"extraction":[100],"improve":[102],"data":[103,207],"selection":[104],"prioritize":[106],"scientists.":[113],"Indeed,":[114],"instead":[115],"providing":[117],"total":[119,167],"associated":[121],"with":[122],"PubMed":[124],"which":[126],"usually":[128],"mix":[130],"trivial":[132],"non-background":[136],"method":[141],"time":[144,158],"selects":[146],"non":[147],"highly":[150],"biological":[152],"entities":[153],"over":[157,190],"bioinvestigators.":[160],"Before":[161],"excluding":[162],"extracted,":[169],"quantification":[171],"their":[173],"also":[176],"provided.":[177],"This":[178],"work":[179],"illustrated":[181],"by":[182],"case":[184],"study":[185],"regarding":[186],"Hepcidin":[187],"gene":[188],"publications":[189],"decade,":[192],"duration":[194],"sufficiently":[197],"long":[198],"enough":[199],"generate":[201],"alternative":[202],"views":[203],"on":[204],"overall":[206],"extracted.":[208]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
