{"id":"https://openalex.org/W2416349955","doi":"https://doi.org/10.2390/biecoll-jib-2015-265","title":"Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2","display_name":"Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2416349955","doi":"https://doi.org/10.2390/biecoll-jib-2015-265","mag":"2416349955","pmid":"https://pubmed.ncbi.nlm.nih.gov/26528563"},"language":"en","primary_location":{"id":"pmid:26528563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26528563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://researchmgt.monash.edu/ws/files/230517710/97230434_oa.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060575386","display_name":"Huaiyu Mi","orcid":"https://orcid.org/0000-0001-8721-202X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]},{"id":"https://openalex.org/I2800817003","display_name":"Southern California University for Professional Studies","ror":"https://ror.org/058zz0t50","country_code":"US","type":"education","lineage":["https://openalex.org/I2800817003"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mi, Huaiyu","raw_affiliation_strings":["University  of Southern California"],"affiliations":[{"raw_affiliation_string":"University  of Southern California","institution_ids":["https://openalex.org/I2800817003","https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003441276","display_name":"Falk Schreiber","orcid":"https://orcid.org/0000-0002-9307-3254"},"institutions":[{"id":"https://openalex.org/I2801009184","display_name":"Luther University","ror":"https://ror.org/015dhy417","country_code":"KR","type":"education","lineage":["https://openalex.org/I2801009184"]},{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Schreiber, Falk","raw_affiliation_strings":["Martin-Luther Universitat Halle-Wittenberg (Martin Luther University Halle-Wittenberg)"],"affiliations":[{"raw_affiliation_string":"Martin-Luther Universitat Halle-Wittenberg (Martin Luther University Halle-Wittenberg)","institution_ids":["https://openalex.org/I68956291","https://openalex.org/I2801009184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053863175","display_name":"Stuart Moodie","orcid":"https://orcid.org/0000-0001-6191-5595"},"institutions":[{"id":"https://openalex.org/I4210140287","display_name":"Pillar (Ukraine)","ror":"https://ror.org/03gpg3e34","country_code":"UA","type":"company","lineage":["https://openalex.org/I4210140287"]}],"countries":["UA"],"is_corresponding":false,"raw_author_name":"Moodie, Stuart","raw_affiliation_strings":["Eight Pillars Ltd"],"affiliations":[{"raw_affiliation_string":"Eight Pillars Ltd","institution_ids":["https://openalex.org/I4210140287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035416919","display_name":"Tobias Czauderna","orcid":"https://orcid.org/0000-0002-1788-9593"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Czauderna, Tobias","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037803004","display_name":"Emek Demir","orcid":"https://orcid.org/0000-0002-3663-7113"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Demir, Emek","raw_affiliation_strings":["Memorial-Sloan Kettering Cancer Center"],"affiliations":[{"raw_affiliation_string":"Memorial-Sloan Kettering Cancer Center","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045676311","display_name":"Robin Haw","orcid":"https://orcid.org/0000-0002-2013-7835"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Haw, Robin","raw_affiliation_strings":["Ontario Institute for Cancer Research"],"affiliations":[{"raw_affiliation_string":"Ontario Institute for Cancer Research","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026945351","display_name":"Augustin Luna","orcid":"https://orcid.org/0000-0001-5709-371X"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luna, Augustin","raw_affiliation_strings":["Memorial-Sloan Kettering Cancer Center"],"affiliations":[{"raw_affiliation_string":"Memorial-Sloan Kettering Cancer Center","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029796591","display_name":"Nicolas Gambardella Le Nov\u00e8re","orcid":"https://orcid.org/0000-0002-6309-7327"},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Le Novere, Nicolas","raw_affiliation_strings":["THE BABRAHAM INSTITUTE"],"affiliations":[{"raw_affiliation_string":"THE BABRAHAM INSTITUTE","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020746275","display_name":"Anatoly Sorokin","orcid":"https://orcid.org/0000-0002-0047-0606"},"institutions":[{"id":"https://openalex.org/I4210107660","display_name":"Institute for Information Transmission Problems","ror":"https://ror.org/013w2d378","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210097085","https://openalex.org/I4210107660"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Sorokin, Anatoly","raw_affiliation_strings":["RAS - Institute for Information Transmission Problems, Russian Academy of Sciences"],"affiliations":[{"raw_affiliation_string":"RAS - Institute for Information Transmission Problems, Russian Academy of Sciences","institution_ids":["https://openalex.org/I4210107660"]}]},{"author_position":"last","author":{"id":null,"display_name":"Villeger, Alice","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Villeger, Alice","raw_affiliation_strings":["Freelance consultant"],"affiliations":[{"raw_affiliation_string":"Freelance consultant","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":7,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5060575386"],"corresponding_institution_ids":["https://openalex.org/I1174212","https://openalex.org/I2800817003"],"apc_list":null,"apc_paid":null,"fwci":1.5089,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.82971111,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"12","issue":"2","first_page":"265","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.48179998993873596,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.48179998993873596,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.18569999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.1688999980688095,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7687190771102905},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.639954686164856},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5614604353904724},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5247219204902649},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5104838609695435},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4923349618911743},{"id":"https://openalex.org/keywords/entity\u2013relationship-model","display_name":"Entity\u2013relationship model","score":0.4687001407146454},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44266238808631897},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4384090304374695},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.36033010482788086},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3175920248031616},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.26578909158706665},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.1709873378276825},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.15196192264556885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11695516109466553}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7687190771102905},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.639954686164856},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5614604353904724},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5247219204902649},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5104838609695435},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4923349618911743},{"id":"https://openalex.org/C103593891","wikidata":"https://www.wikidata.org/wiki/Q624546","display_name":"Entity\u2013relationship model","level":3,"score":0.4687001407146454},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44266238808631897},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4384090304374695},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.36033010482788086},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3175920248031616},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.26578909158706665},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.1709873378276825},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.15196192264556885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11695516109466553},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":6,"locations":[{"id":"pmid:26528563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26528563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:monash.edu:openaire/3f08e5e2-b089-4852-a7b4-7f6601013b09","is_oa":true,"landing_page_url":"https://research.monash.edu/en/publications/3f08e5e2-b089-4852-a7b4-7f6601013b09","pdf_url":"https://researchmgt.monash.edu/ws/files/230517710/97230434_oa.pdf","source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mi, H, Schreiber, F, Moodie, S, Czauderna, T, Demir, E, Haw, R, Luna, A, Le Nov\u00e8re, N, Sorokin, A & Vill\u00e9ger, A 2015, 'Systems Biology Graphical Notation : Activity Flow language Level 1 Version 1.2', Journal of integrative bioinformatics, vol. 12, no. 2, 265, pp. 340-381. https://doi.org/10.2390/biecoll-jib-2015-265","raw_type":"article"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5369","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2015/5369/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de","raw_type":"Journal Article"},{"id":"pmh:oai:kops.uni-konstanz.de:123456789/38193","is_oa":false,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bsz:352-2-dhuz7v0hdyac2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401487","display_name":"KOPS (University of Konstanz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189712700","host_organization_name":"University of Konstanz","host_organization_lineage":["https://openalex.org/I189712700"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics. 2015, 12(2), 265. eISSN 1613-4516. Verf\u00fcgbar unter: doi: 10.2390/biecoll-jib-2015-265","raw_type":"doc-type:Text"},{"id":"pmh:oai:monash.edu:publications/3f08e5e2-b089-4852-a7b4-7f6601013b09","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=84982094941&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mi , H , Schreiber , F , Moodie , S , Czauderna , T , Demir , E , Haw , R , Luna , A , Le Nov\u00e8re , N , Sorokin , A &amp; Vill\u00e9ger , A 2015 , ' Systems Biology Graphical Notation : Activity Flow language Level 1 Version 1.2 ' , Journal of integrative bioinformatics , vol. 12 , no. 2 , 265 , pp. 340-381 . https://doi.org/10.2390/biecoll-jib-2015-265","raw_type":"article"},{"id":"doi:10.2390/biecoll-jib-2015-265","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2015-265","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:monash.edu:openaire/3f08e5e2-b089-4852-a7b4-7f6601013b09","is_oa":true,"landing_page_url":"https://research.monash.edu/en/publications/3f08e5e2-b089-4852-a7b4-7f6601013b09","pdf_url":"https://researchmgt.monash.edu/ws/files/230517710/97230434_oa.pdf","source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mi, H, Schreiber, F, Moodie, S, Czauderna, T, Demir, E, Haw, R, Luna, A, Le Nov\u00e8re, N, Sorokin, A & Vill\u00e9ger, A 2015, 'Systems Biology Graphical Notation : Activity Flow language Level 1 Version 1.2', Journal of integrative bioinformatics, vol. 12, no. 2, 265, pp. 340-381. https://doi.org/10.2390/biecoll-jib-2015-265","raw_type":"article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G12401395","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G4611969921","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4864544293","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G7485138276","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G8044579487","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320311508","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54"},{"id":"https://openalex.org/F4320314024","display_name":"Ontario Genomics","ror":null},{"id":"https://openalex.org/F4320317194","display_name":"USC Norris Comprehensive Cancer Center","ror":null},{"id":"https://openalex.org/F4320319905","display_name":"Ontario Genomics Institute","ror":"https://ror.org/00c68jz96"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320322443","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2416349955.pdf","grobid_xml":"https://content.openalex.org/works/W2416349955.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1565561072","https://openalex.org/W2069157810","https://openalex.org/W2099987999","https://openalex.org/W2102664288","https://openalex.org/W2103031848"],"related_works":["https://openalex.org/W27605384","https://openalex.org/W2135522367","https://openalex.org/W1576648414","https://openalex.org/W2003067785","https://openalex.org/W4242902282","https://openalex.org/W2152376294","https://openalex.org/W2188979829","https://openalex.org/W4242519561","https://openalex.org/W4254464710","https://openalex.org/W2416349955"],"abstract_inverted_index":{"The":[0,20,91,148,179],"Systems":[1],"Biological":[2],"Graphical":[3],"Notation":[4],"(SBGN)":[5],"is":[6,24,204],"an":[7],"international":[8],"community":[9],"effort":[10],"for":[11,32,75],"standardized":[12],"graphical":[13],"representations":[14],"of":[15,22,47,78,81,89,99,142,155,184,201],"biological":[16,48,82,153,211,225],"pathways":[17,209],"and":[18,29,44,55,70,83,110,117,136,194,213],"networks.":[19],"goal":[21],"SBGN":[23,62,92,108,122],"to":[25,41,139,173,207],"provide":[26,182],"unambiguous":[27],"pathway":[28],"network":[30],"maps":[31],"readers":[33],"with":[34,120],"different":[35,51,79,87],"scientific":[36],"backgrounds":[37],"as":[38,40,159],"well":[39],"support":[42],"efficient":[43],"accurate":[45],"exchange":[46],"knowledge":[49],"between":[50,188],"research":[52],"communities,":[53],"industry,":[54],"other":[56,146],"players":[57],"in":[58,210,223],"systems":[59,85],"biology.":[60],"Three":[61],"languages,":[63],"Process":[64],"Description":[65],"(PD),":[66],"Entity":[67],"Relationship":[68],"(ER)":[69],"Activity":[71,93],"Flow":[72,94],"(AF),":[73],"allow":[74],"the":[76,97,115,125,128,134,140,143,152,156,189,205],"representation":[77],"aspects":[80],"biochemical":[84],"at":[86],"levels":[88],"detail.":[90],"language":[95],"represents":[96],"influences":[98],"activities":[100,154],"among":[101],"various":[102],"entities":[103,116],"within":[104],"a":[105,220],"network.":[106],"Unlike":[107],"PD":[109],"ER":[111],"that":[112],"focus":[113],"on":[114,127],"their":[118,137],"relationships":[119,185],"others,":[121],"AF":[123,203],"puts":[124],"emphasis":[126],"functions":[129,141],"(or":[130,186],"activities)":[131],"performed":[132],"by":[133],"entities,":[135,157],"effects":[138],"same":[144],"or":[145,165],"entities.":[147],"nodes":[149],"(elements)":[150],"describe":[151],"such":[158],"protein":[160],"kinase":[161],"activity,":[162,167],"binding":[163],"activity":[164],"receptor":[166],"which":[168],"can":[169],"be":[170],"easily":[171],"mapped":[172],"Gene":[174],"Ontology":[175],"molecular":[176],"function":[177],"terms.":[178],"edges":[180],"(connections)":[181],"descriptions":[183],"influences)":[187],"activities,":[190],"e.g.,":[191],"positive":[192],"influence":[193],"negative":[195],"influence.":[196],"Among":[197],"all":[198],"three":[199],"languages":[200],"SBGN,":[202],"closest":[206],"signaling":[208],"literature":[212],"textbooks,":[214],"but":[215],"its":[216],"well-defined":[217],"semantics":[218],"offer":[219],"superior":[221],"precision":[222],"expressing":[224],"knowledge.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
