{"id":"https://openalex.org/W2414596680","doi":"https://doi.org/10.2390/biecoll-jib-2015-257","title":"Shared Bioinformatics Databases within the Unipro UGENE Platform","display_name":"Shared Bioinformatics Databases within the Unipro UGENE Platform","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2414596680","doi":"https://doi.org/10.2390/biecoll-jib-2015-257","mag":"2414596680","pmid":"https://pubmed.ncbi.nlm.nih.gov/26527191"},"language":"en","primary_location":{"id":"pmid:26527191","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26527191","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doaj.org/article/f78b06fe83834873a91b045230b31bc5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108592005","display_name":"Protsyuk Ivan V.","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137651","display_name":"Federal Research Center for Information and Computational Technologies","ror":"https://ror.org/02x3mf211","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210137651"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Protsyuk, Ivan V.","raw_affiliation_strings":["Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russia Russian Federation"],"affiliations":[{"raw_affiliation_string":"Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russia Russian Federation","institution_ids":["https://openalex.org/I4210137651"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Grekhov, German A.","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137651","display_name":"Federal Research Center for Information and Computational Technologies","ror":"https://ror.org/02x3mf211","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210137651"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Grekhov, German A.","raw_affiliation_strings":["Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russian Federation","institution_ids":["https://openalex.org/I4210137651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112159371","display_name":"T. V.","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137651","display_name":"Federal Research Center for Information and Computational Technologies","ror":"https://ror.org/02x3mf211","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210137651"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Tiunov, Alexey V.","raw_affiliation_strings":["Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russian Federation","institution_ids":["https://openalex.org/I4210137651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057126264","display_name":"Fursov Mikhail Yu.","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137651","display_name":"Federal Research Center for Information and Computational Technologies","ror":"https://ror.org/02x3mf211","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210137651"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Fursov, Mikhail Yu.","raw_affiliation_strings":["Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russian Federation"],"affiliations":[{"raw_affiliation_string":"Unipro Center for Information Technologies, 6/1 Lavrentieva Ave., 630090 Novosibirsk, Russian Federation","institution_ids":["https://openalex.org/I4210137651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5108592005"],"corresponding_institution_ids":["https://openalex.org/I4210137651"],"apc_list":null,"apc_paid":null,"fwci":0.1506,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.588991,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"12","issue":"1","first_page":"257","last_page":"257"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8234573602676392},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6051816940307617},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.46744880080223083},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4494481086730957},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4261002540588379},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4239647388458252},{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.4102684259414673},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14195463061332703}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8234573602676392},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6051816940307617},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.46744880080223083},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4494481086730957},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4261002540588379},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4239647388458252},{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.4102684259414673},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14195463061332703},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"pmid:26527191","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26527191","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f78b06fe83834873a91b045230b31bc5","is_oa":true,"landing_page_url":"https://doaj.org/article/f78b06fe83834873a91b045230b31bc5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 12, Iss 1, Pp 24-34 (2015)","raw_type":"article"},{"id":"doi:10.2390/biecoll-jib-2015-257","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2015-257","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:doaj.org/article:f78b06fe83834873a91b045230b31bc5","is_oa":true,"landing_page_url":"https://doaj.org/article/f78b06fe83834873a91b045230b31bc5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 12, Iss 1, Pp 24-34 (2015)","raw_type":"article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W1564625264","https://openalex.org/W2044120020","https://openalex.org/W2123724865","https://openalex.org/W2128880918"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2366230866","https://openalex.org/W2357906747","https://openalex.org/W2372895414","https://openalex.org/W4244973452","https://openalex.org/W11042816","https://openalex.org/W4251831157","https://openalex.org/W2348049494","https://openalex.org/W1992987618","https://openalex.org/W2150967192"],"abstract_inverted_index":{"Unipro":[0],"UGENE":[1,93,98,121,136,212,230],"is":[2,168,186,196,206,231],"an":[3,44,47,203],"open-source":[4],"bioinformatics":[5,25],"toolkit":[6],"that":[7],"integrates":[8],"popular":[9],"tools":[10],"along":[11],"with":[12,112],"original":[13],"instruments":[14],"for":[15,49,71,219,222],"molecular":[16],"biologists":[17],"within":[18],"a":[19,33,88,104,153,197],"unified":[20],"user":[21,94,205],"interface.":[22],"Nowadays,":[23],"most":[24],"desktop":[26],"applications,":[27],"including":[28],"UGENE,":[29],"make":[30],"use":[31],"of":[32,41,64,68,81,130,157,161,173,180,188,191],"local":[34],"data":[35,132,178,218],"model":[36],"while":[37],"processing":[38],"different":[39],"types":[40],"data.":[42,58],"Such":[43,115],"approach":[45],"causes":[46],"inconvenience":[48],"scientists":[50],"working":[51],"cooperatively":[52],"and":[53,74,108,123],"relying":[54],"on":[55,86],"the":[56,62,92,158,169,184,225],"same":[57,226],"This":[59],"refers":[60],"to":[61,103,152,165,176,208,216],"need":[63],"making":[65],"multiple":[66,141],"copies":[67],"certain":[69],"files":[70],"every":[72],"workplace":[73],"maintaining":[75],"synchronization":[76],"between":[77],"them":[78],"in":[79,224],"case":[80],"modifications.":[82],"Therefore,":[83],"we":[84],"focused":[85],"delivering":[87],"collaborative":[89],"work":[90],"into":[91],"experience.":[95],"Currently,":[96],"several":[97],"installations":[99],"can":[100,110,117,144],"be":[101,118,124,146],"connected":[102],"designated":[105],"shared":[106,177,217],"database":[107,199],"users":[109,122,220],"interact":[111],"it":[113],"simultaneously.":[114],"databases":[116],"created":[119],"by":[120,135],"used":[125],"at":[126],"their":[127,181],"discretion.":[128],"Objects":[129],"each":[131],"type,":[133],"supported":[134],"such":[137],"as":[138],"sequences,":[139],"annotations,":[140],"alignments,":[142],"etc.,":[143],"now":[145],"easily":[147],"imported":[148],"from":[149],"or":[150,228],"exported":[151],"remote":[154],"storage.":[155],"One":[156],"main":[159],"advantages":[160],"this":[162],"system,":[163],"compared":[164],"existing":[166],"ones,":[167],"almost":[170],"simultaneous":[171],"access":[172,215],"client":[174],"applications":[175],"regardless":[179],"volume.":[182],"Moreover,":[183],"system":[185],"capable":[187],"storing":[189],"millions":[190],"objects.":[192],"The":[193],"storage":[194],"itself":[195],"regular":[198],"server":[200],"so":[201],"even":[202],"inexpert":[204],"able":[207],"deploy":[209],"it.":[210],"Thus,":[211],"may":[213],"provide":[214],"located,":[221],"example,":[223],"laboratory":[227],"institution.":[229],"available":[232],"at:":[233],"http://ugene.net/download.html.":[234]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2016-06-24T00:00:00"}
