{"id":"https://openalex.org/W2187636780","doi":"https://doi.org/10.2390/biecoll-jib-2014-235","title":"Integrated visualization of a multi-omics study of starvation in mouse intestine","display_name":"Integrated visualization of a multi-omics study of starvation in mouse intestine","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2187636780","doi":"https://doi.org/10.2390/biecoll-jib-2014-235","mag":"2187636780","pmid":"https://pubmed.ncbi.nlm.nih.gov/24675236"},"language":"en","primary_location":{"id":"pmid:24675236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24675236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doaj.org/article/6f4c8352a79c4572b165396b29597ea8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058353197","display_name":"Martijn van Iersel","orcid":"https://orcid.org/0000-0002-5877-4338"},"institutions":[{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Van Iersel, Martijn P.","raw_affiliation_strings":["General Bioinformatics, Reading, United Kingdom"],"affiliations":[{"raw_affiliation_string":"General Bioinformatics, Reading, United Kingdom","institution_ids":["https://openalex.org/I71052956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091572548","display_name":"Milka Sokolovi\u0107","orcid":"https://orcid.org/0000-0002-3957-4656"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sokolovic, Milka","raw_affiliation_strings":["Department of Medical Biochemistry, Academic Medical Centre, University of Amsterdam, The Netherlands, and European Food Information Council, Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Medical Biochemistry, Academic Medical Centre, University of Amsterdam, The Netherlands, and European Food Information Council, Brussels, Belgium","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056788680","display_name":"Kaatje Lenaerts","orcid":"https://orcid.org/0000-0002-9858-0538"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lenaerts, Kaatje","raw_affiliation_strings":["Department of Surgery, NUTRIM School for Nutrition, Toxicology, and Metabolism, Maastricht University, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Surgery, NUTRIM School for Nutrition, Toxicology, and Metabolism, Maastricht University, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062841937","display_name":"Martina Kutmon","orcid":"https://orcid.org/0000-0002-7699-8191"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kutmon, Martina","raw_affiliation_strings":["Department of Bioinformatics BiGCaT, Maastricht University, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics BiGCaT, Maastricht University, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061625650","display_name":"Freek G. Bouwman","orcid":"https://orcid.org/0000-0002-5582-1370"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bouwman, Freek G.","raw_affiliation_strings":["Department of Human Biology, NUTRIM School for Nutrition, Toxicology, and Metabolism, Maastricht University, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Biology, NUTRIM School for Nutrition, Toxicology, and Metabolism, Maastricht University, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052827329","display_name":"Wouter H. Lamers","orcid":"https://orcid.org/0000-0003-3032-7824"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lamers, Wouter H.","raw_affiliation_strings":["Tytgat Institute for Liver and Intestinal Research (formerly AMC Liver Center), Academic Medical Center, University of Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Tytgat Institute for Liver and Intestinal Research (formerly AMC Liver Center), Academic Medical Center, University of Amsterdam, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019652192","display_name":"Edwin C.M. Mariman","orcid":"https://orcid.org/0000-0002-5691-8633"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mariman, Edwin C. M.","raw_affiliation_strings":["Department of Human Biology, NUTRIM School for Nutrition, Toxicology, and Metabolism, Maastricht University, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Biology, NUTRIM School for Nutrition, Toxicology, and Metabolism, Maastricht University, The Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075750072","display_name":"Chris T. Evelo","orcid":"https://orcid.org/0000-0002-5301-3142"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Evelo, Chris T.","raw_affiliation_strings":["Dept. Bioinformatics - BiGCaT, Maastricht University, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Dept. Bioinformatics - BiGCaT, Maastricht University, The Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5058353197"],"corresponding_institution_ids":["https://openalex.org/I71052956"],"apc_list":null,"apc_paid":null,"fwci":1.1408,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.7817219,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":"1","first_page":"235","last_page":"235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6124477386474609},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5909578800201416},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5874467492103577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5792321562767029},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5191535353660583},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4748169183731079},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42729824781417847},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41800445318222046},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3855718970298767},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29525673389434814},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2886497974395752},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19753041863441467},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16182032227516174}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6124477386474609},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5909578800201416},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5874467492103577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5792321562767029},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5191535353660583},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4748169183731079},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42729824781417847},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41800445318222046},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3855718970298767},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29525673389434814},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2886497974395752},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19753041863441467},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16182032227516174},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013217","descriptor_name":"Starvation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013217","descriptor_name":"Starvation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013217","descriptor_name":"Starvation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013217","descriptor_name":"Starvation","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013217","descriptor_name":"Starvation","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013217","descriptor_name":"Starvation","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"pmid:24675236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24675236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/dbb00d3a-658c-4f90-bfbd-6ec6f656ca23","is_oa":false,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/dbb00d3a-658c-4f90-bfbd-6ec6f656ca23","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"van Iersel, M P, Sokolovic, M, Lenaerts, K, Kutmon, M, Bouwman, F G, Lamers, W H, Mariman, E C & Evelo, C T 2014, 'Integrated visualization of a multi-omics study of starvation in mouse intestine', Journal of integrative bioinformatics, vol. 11, no. 1, 235. https://doi.org/10.2390/biecoll-jib-2014-235","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.amsterdamumc.nl:publications/1bb43ef0-4eac-43d4-8492-ec38028e5c73","is_oa":false,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/1bb43ef0-4eac-43d4-8492-ec38028e5c73","pdf_url":null,"source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"van Iersel, M P, Sokolovi\u0107, M, Lenaerts, K, Kutmon, M, Bouwman, F G, Lamers, W H, Mariman, E C M & Evelo, C T 2014, 'Integrated visualization of a multi-omics study of starvation in mouse intestine', Journal of integrative bioinformatics, vol. 11, no. 1, pp. 235-(16 p.). https://doi.org/10.2390/biecoll-jib-2014-235","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/d4e52c55-b57e-4127-b621-484e83bc5c52","is_oa":false,"landing_page_url":"https://pure.amc.nl/en/publications/integrated-visualization-of-a-multiomics-study-of-starvation-in-mouse-intestine(d4e52c55-b57e-4127-b621-484e83bc5c52).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics, 11(1), 235 - (16 p.). Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5313","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2014/5313/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=235","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:6f4c8352a79c4572b165396b29597ea8","is_oa":true,"landing_page_url":"https://doaj.org/article/6f4c8352a79c4572b165396b29597ea8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 11, Iss 1, Pp 1-16 (2014)","raw_type":"article"},{"id":"doi:10.2390/biecoll-jib-2014-235","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2014-235","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:doaj.org/article:6f4c8352a79c4572b165396b29597ea8","is_oa":true,"landing_page_url":"https://doaj.org/article/6f4c8352a79c4572b165396b29597ea8","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 11, Iss 1, Pp 1-16 (2014)","raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W7409263","https://openalex.org/W191098488","https://openalex.org/W1964552518","https://openalex.org/W1969896761","https://openalex.org/W1970594207","https://openalex.org/W1972469797","https://openalex.org/W1989277387","https://openalex.org/W1990953761","https://openalex.org/W2021052479","https://openalex.org/W2023098599","https://openalex.org/W2040676413","https://openalex.org/W2041502250","https://openalex.org/W2054668329","https://openalex.org/W2056840161","https://openalex.org/W2057421161","https://openalex.org/W2058060770","https://openalex.org/W2059019487","https://openalex.org/W2088437539","https://openalex.org/W2090073543","https://openalex.org/W2091331901","https://openalex.org/W2093772131","https://openalex.org/W2094397891","https://openalex.org/W2096122490","https://openalex.org/W2101050876","https://openalex.org/W2107960986","https://openalex.org/W2118577784","https://openalex.org/W2120680184","https://openalex.org/W2135435176","https://openalex.org/W2136438591","https://openalex.org/W2144342921","https://openalex.org/W2149744096","https://openalex.org/W2155737525","https://openalex.org/W2161613478","https://openalex.org/W2168846334","https://openalex.org/W2169448756","https://openalex.org/W2170949754","https://openalex.org/W2427740722"],"related_works":["https://openalex.org/W1881709772","https://openalex.org/W2047205606","https://openalex.org/W4321437894","https://openalex.org/W2045448027","https://openalex.org/W3187594710","https://openalex.org/W2002649322","https://openalex.org/W2109364024","https://openalex.org/W2080856312","https://openalex.org/W2086860678","https://openalex.org/W2149218575"],"abstract_inverted_index":{"Our":[0,200],"understanding":[1],"of":[2,13,20,39,98,180,195,234],"complex":[3],"biological":[4],"processes":[5],"can":[6,205,215],"be":[7,206,216],"enhanced":[8],"by":[9],"combining":[10],"different":[11,37],"kinds":[12],"high-throughput":[14],"experimental":[15],"data,":[16],"but":[17],"the":[18,61,68,96,151,160,176,181,193,196,231],"use":[19],"incompatible":[21],"identifiers":[22],"makes":[23],"data":[24,88,171,221],"integration":[25],"a":[26],"challenge.":[27],"We":[28,66,154],"aimed":[29],"to":[30,49,74,158,187,198,208],"improve":[31],"methods":[32,201],"for":[33],"integrating":[34],"and":[35,60,78,86,114,126,137,163,169,204],"visualizing":[36],"types":[38],"omics":[40],"data.":[41],"To":[42],"validate":[43],"these":[44],"methods,":[45],"we":[46],"applied":[47,207],"them":[48],"two":[50],"previous":[51],"studies":[52],"on":[53,184,190,229],"starvation":[54],"in":[55,141,192],"mice,":[56],"one":[57],"using":[58,63],"proteomics":[59,170],"other":[62,121,174],"transcriptomics":[64,168],"technology.":[65],"extended":[67],"PathVisio":[69,213],"software":[70,214],"with":[71],"new":[72,188],"plugins":[73],"link":[75],"proteins,":[76],"transcripts":[77],"pathways.":[79],"A":[80],"low":[81],"overall":[82],"correlation":[83,101],"between":[84],"proteome":[85],"transcriptome":[87],"was":[89,102],"detected":[90],"(Spearman":[91],"rank":[92],"correlation:":[93],"0.21).":[94],"At":[95],"level":[97],"individual":[99],"genes,":[100],"highly":[103],"variable.":[104],"Many":[105],"mRNA/protein":[106],"pairs,":[107,122],"such":[108,123],"as":[109,124],"fructose":[110],"biphosphate":[111],"aldolase":[112],"B":[113],"ATP":[115],"Synthase,":[116],"show":[117],"good":[118],"correlation.":[119],"For":[120],"ferritin":[125],"elongation":[127],"factor":[128],"2,":[129],"an":[130],"interesting":[131],"effect":[132],"is":[133],"observed,":[134],"where":[135],"mRNA":[136],"protein":[138],"levels":[139],"change":[140],"opposite":[142],"directions,":[143],"suggesting":[144],"they":[145],"are":[146,202,222],"not":[147],"primarily":[148],"regulated":[149],"at":[150,175,218,224],"transcriptional":[152],"level.":[153,178],"used":[155],"pathway":[156,177,232],"diagrams":[157],"visualize":[159],"integrated":[161,182],"datasets":[162],"found":[164],"it":[165],"encouraging":[166],"that":[167],"supported":[172],"each":[173],"Visualization":[179],"dataset":[183],"pathways":[185],"led":[186],"observations":[189],"gene-regulation":[191],"response":[194],"gut":[197],"starvation.":[199],"generic":[203],"any":[209],"multi-omics":[210],"study.":[211],"The":[212],"obtained":[217],"http://www.pathvisio.org.":[219],"Supplemental":[220],"available":[223],"http://www.bigcat.unimaas.nl/data/jib-supplemental/":[225],",":[226],"including":[227],"instructions":[228],"reproducing":[230],"visualizations":[233],"this":[235],"manuscript.":[236]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
