{"id":"https://openalex.org/W2183688281","doi":"https://doi.org/10.2390/biecoll-jib-2013-229","title":"Model checking software for phylogenetic trees using distribution and database methods","display_name":"Model checking software for phylogenetic trees using distribution and database methods","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2183688281","doi":"https://doi.org/10.2390/biecoll-jib-2013-229","mag":"2183688281","pmid":"https://pubmed.ncbi.nlm.nih.gov/24231143"},"language":"en","primary_location":{"id":"pmid:24231143","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24231143","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.2390/biecoll-jib-2013-229","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080044871","display_name":"Jos\u00e9 Ignacio Requeno","orcid":"https://orcid.org/0000-0001-5111-8357"},"institutions":[{"id":"https://openalex.org/I255234318","display_name":"Universidad de Zaragoza","ror":"https://ror.org/012a91z28","country_code":"ES","type":"education","lineage":["https://openalex.org/I255234318"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Requeno, Jose Ignacio","raw_affiliation_strings":["Department of Computer Science and Systems Engineering, Universidad de Zaragoza, C/ Mar\u00eda de Luna 1, 50018, Zaragoza, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Systems Engineering, Universidad de Zaragoza, C/ Mar\u00eda de Luna 1, 50018, Zaragoza, Spain","institution_ids":["https://openalex.org/I255234318"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066803149","display_name":"Jos\u00e9 Manuel Colom","orcid":"https://orcid.org/0000-0001-5066-4030"},"institutions":[{"id":"https://openalex.org/I255234318","display_name":"Universidad de Zaragoza","ror":"https://ror.org/012a91z28","country_code":"ES","type":"education","lineage":["https://openalex.org/I255234318"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Colom, Jose Manuel","raw_affiliation_strings":["1Department of Computer Science and Systems Engineering (DIIS), Universidad de Zaragoza, C/ Mar\u00eda de Luna 1, 50018 Zaragoza, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Department of Computer Science and Systems Engineering (DIIS), Universidad de Zaragoza, C/ Mar\u00eda de Luna 1, 50018 Zaragoza, Spain","institution_ids":["https://openalex.org/I255234318"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I255234318"],"apc_list":null,"apc_paid":null,"fwci":1.6774,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.8857475,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"10","issue":"3","first_page":"229","last_page":"229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8659248352050781},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7801986932754517},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.703829824924469},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5724926590919495},{"id":"https://openalex.org/keywords/model-checking","display_name":"Model checking","score":0.5379420518875122},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5090741515159607},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.4757152199745178},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.45165881514549255},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43938153982162476},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.42412269115448},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3838747441768646},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3665401339530945},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.23136451840400696},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15421408414840698},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1316922903060913},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07701236009597778}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8659248352050781},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7801986932754517},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.703829824924469},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5724926590919495},{"id":"https://openalex.org/C110251889","wikidata":"https://www.wikidata.org/wiki/Q1569697","display_name":"Model checking","level":2,"score":0.5379420518875122},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5090741515159607},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.4757152199745178},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.45165881514549255},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43938153982162476},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.42412269115448},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3838747441768646},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3665401339530945},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23136451840400696},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15421408414840698},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1316922903060913},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07701236009597778},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"pmid:24231143","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24231143","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5307","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2013/5307/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=229","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2013-229","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2013-229","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2013-229","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2013-229","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6000000238418579}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W2649574","https://openalex.org/W22348942","https://openalex.org/W156746702","https://openalex.org/W1489391022","https://openalex.org/W1498432697","https://openalex.org/W1547246349","https://openalex.org/W1977090137","https://openalex.org/W1990607929","https://openalex.org/W2022717847","https://openalex.org/W2064632458","https://openalex.org/W2068240988","https://openalex.org/W2071465766","https://openalex.org/W2099120582","https://openalex.org/W2110345230","https://openalex.org/W2112204304","https://openalex.org/W2117055771","https://openalex.org/W2130025446","https://openalex.org/W2137467159","https://openalex.org/W2340735175","https://openalex.org/W2764433274","https://openalex.org/W2913459036"],"related_works":["https://openalex.org/W2277002874","https://openalex.org/W23518792","https://openalex.org/W2964970368","https://openalex.org/W1979781836","https://openalex.org/W2145171033","https://openalex.org/W4254526042","https://openalex.org/W1801993675","https://openalex.org/W1900393469","https://openalex.org/W38902447","https://openalex.org/W2183688281"],"abstract_inverted_index":{"Model":[0],"checking,":[1],"a":[2,85,92,168],"generic":[3,43],"and":[4,105,131,158],"formal":[5],"paradigm":[6],"stemming":[7],"from":[8,26],"computer":[9],"science":[10],"based":[11,114],"on":[12,115],"temporal":[13],"logics,":[14],"has":[15],"been":[16],"proposed":[17],"for":[18,64,138],"the":[19,27,30,34,49,52,62,81,102,107,117,124,128,139,152,163],"study":[20],"of":[21,29,54,79,87,123,141,147,154,165],"biological":[22],"properties":[23,166],"that":[24],"emerge":[25],"labeling":[28],"states":[31],"defined":[32],"over":[33],"phylogenetic":[35,82,125,170],"tree.":[36,171],"This":[37],"strategy":[38,112],"allows":[39],"us":[40,160],"to":[41,94,99,120,134,161],"use":[42],"software":[44],"tools":[45],"already":[46],"present":[47],"in":[48,167],"industry.":[50],"However,":[51],"performance":[53],"traditional":[55],"model":[56,156],"checking":[57,157],"is":[58,113],"penalized":[59],"when":[60],"scaling":[61],"system":[63],"large":[65,142],"phylogenies.":[66],"To":[67],"this":[68],"end,":[69],"two":[70],"strategies":[71],"are":[72],"presented":[73],"here.":[74],"The":[75,110,145],"first":[76],"one":[77,90],"consists":[78],"partitioning":[80],"tree":[83,126],"into":[84],"set":[86],"subgraphs":[88],"each":[89,121],"representing":[91],"subproblem":[93],"be":[95],"verified":[96],"so":[97],"as":[98],"speed":[100],"up":[101],"computation":[103],"time":[104],"distribute":[106],"memory":[108],"consumption.":[109],"second":[111],"uncoupling":[116],"information":[118,143],"associated":[119],"state":[122],"(mainly,":[127],"DNA":[129],"sequence)":[130],"exporting":[132],"it":[133],"an":[135],"external":[136],"tool":[137],"management":[140],"systems.":[144],"integration":[146],"all":[148],"these":[149],"approaches":[150],"outperforms":[151],"results":[153],"monolithic":[155],"helps":[159],"execute":[162],"verification":[164],"real":[169]},"counts_by_year":[{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}