{"id":"https://openalex.org/W1525281610","doi":"https://doi.org/10.2390/biecoll-jib-2013-224","title":"BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology","display_name":"BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1525281610","doi":"https://doi.org/10.2390/biecoll-jib-2013-224","mag":"1525281610","pmid":"https://pubmed.ncbi.nlm.nih.gov/23571273"},"language":"en","primary_location":{"id":"pmid:23571273","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23571273","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://nrl.northumbria.ac.uk/id/eprint/42299/1/%5BJournal%20of%20Integrative%20Bioinformatics%5D%20BacillOndex%20An%20Integrated%20Data%20Resource%20for%20Systems%20and%20Synthetic%20Biology.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028639846","display_name":"G\u00f6ksel M\u0131s\u0131rl\u0131","orcid":"https://orcid.org/0000-0002-2454-7188"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Misirli, Goksel","raw_affiliation_strings":["School of Computing Science, Newcastle University, Newcastle upon Tyne, UK, NE1 7RU"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Newcastle University, Newcastle upon Tyne, UK, NE1 7RU","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wipat, Anil","raw_affiliation_strings":["Newcastle University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034929252","display_name":"Joseph Mullen","orcid":"https://orcid.org/0000-0001-9767-0999"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mullen, Joseph","raw_affiliation_strings":["Newcastle University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047178967","display_name":"Katherine James","orcid":"https://orcid.org/0000-0003-0167-8393"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James, Katherine","raw_affiliation_strings":["Newcastle University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109242321","display_name":"Matthew Pocock","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Pocock, Matthew","raw_affiliation_strings":["Newcastle University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110619014","display_name":"Wendy D. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Smith, Wendy","raw_affiliation_strings":["Newcastle University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016308266","display_name":"Nick Allenby","orcid":"https://orcid.org/0000-0002-9561-5010"},"institutions":[{"id":"https://openalex.org/I4210090653","display_name":"Demuris (United Kingdom)","ror":"https://ror.org/009mt7c73","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210090653"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Allenby, Nick","raw_affiliation_strings":["Demuris Ltd"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Demuris Ltd","institution_ids":["https://openalex.org/I4210090653"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040063046","display_name":"Jennifer Hallinan","orcid":"https://orcid.org/0000-0002-2860-1022"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hallinan, Jennifer S.","raw_affiliation_strings":["Newcastle University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8977,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.72998069,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"2","first_page":"224","last_page":"224"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacillus-subtilis","display_name":"Bacillus subtilis","score":0.6581256985664368},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6117058992385864},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5930236577987671},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.522001326084137},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5126837491989136},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49746087193489075},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.47914808988571167},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4449363946914673},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.44016796350479126},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26833850145339966},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2598741054534912},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.09375441074371338}],"concepts":[{"id":"https://openalex.org/C2777272437","wikidata":"https://www.wikidata.org/wiki/Q131238","display_name":"Bacillus subtilis","level":3,"score":0.6581256985664368},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6117058992385864},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5930236577987671},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.522001326084137},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5126837491989136},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49746087193489075},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.47914808988571167},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4449363946914673},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.44016796350479126},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26833850145339966},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2598741054534912},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.09375441074371338},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001412","descriptor_name":"Bacillus subtilis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"pmid:23571273","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23571273","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:nrl.northumbria.ac.uk:42299","is_oa":true,"landing_page_url":null,"pdf_url":"http://nrl.northumbria.ac.uk/id/eprint/42299/1/%5BJournal%20of%20Integrative%20Bioinformatics%5D%20BacillOndex%20An%20Integrated%20Data%20Resource%20for%20Systems%20and%20Synthetic%20Biology.pdf","source":{"id":"https://openalex.org/S4306401884","display_name":"Northumbria Research Link (Northumbria University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32394136","host_organization_name":"Northumbria University","host_organization_lineage":["https://openalex.org/I32394136"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5270","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2013/5270/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=224","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2013-224","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2013-224","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:nrl.northumbria.ac.uk:42299","is_oa":true,"landing_page_url":null,"pdf_url":"http://nrl.northumbria.ac.uk/id/eprint/42299/1/%5BJournal%20of%20Integrative%20Bioinformatics%5D%20BacillOndex%20An%20Integrated%20Data%20Resource%20for%20Systems%20and%20Synthetic%20Biology.pdf","source":{"id":"https://openalex.org/S4306401884","display_name":"Northumbria Research Link (Northumbria University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32394136","host_organization_name":"Northumbria University","host_organization_lineage":["https://openalex.org/I32394136"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G26848450","display_name":null,"funder_award_id":"BB/F006063/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3752877916","display_name":null,"funder_award_id":"BB/F006012/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4026572860","display_name":null,"funder_award_id":"EP/H019162/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1525281610.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W50265910","https://openalex.org/W1721093094","https://openalex.org/W1844893789","https://openalex.org/W1981021538","https://openalex.org/W1981473578","https://openalex.org/W1982249722","https://openalex.org/W1984248485","https://openalex.org/W1995887054","https://openalex.org/W2008449595","https://openalex.org/W2013522363","https://openalex.org/W2022472106","https://openalex.org/W2046618236","https://openalex.org/W2061937267","https://openalex.org/W2069106324","https://openalex.org/W2075100243","https://openalex.org/W2079531107","https://openalex.org/W2091418534","https://openalex.org/W2097189192","https://openalex.org/W2100882223","https://openalex.org/W2101292724","https://openalex.org/W2103017472","https://openalex.org/W2104097656","https://openalex.org/W2105128860","https://openalex.org/W2114804859","https://openalex.org/W2123060905","https://openalex.org/W2123196669","https://openalex.org/W2130253098","https://openalex.org/W2135805255","https://openalex.org/W2149194035","https://openalex.org/W2151084213","https://openalex.org/W2156467546","https://openalex.org/W2156783270","https://openalex.org/W2158170462","https://openalex.org/W2163240970","https://openalex.org/W2164997719","https://openalex.org/W2394504874","https://openalex.org/W3125940556"],"related_works":["https://openalex.org/W2060184615","https://openalex.org/W2139488145","https://openalex.org/W1984984816","https://openalex.org/W2163082684","https://openalex.org/W2524455237","https://openalex.org/W1647870287","https://openalex.org/W2139830657","https://openalex.org/W2405543539","https://openalex.org/W2953282636","https://openalex.org/W2911730479","https://openalex.org/W2159512882","https://openalex.org/W2106763184","https://openalex.org/W1506484741","https://openalex.org/W2419317576","https://openalex.org/W2594828811","https://openalex.org/W2097591011","https://openalex.org/W1744905343","https://openalex.org/W2153512780","https://openalex.org/W2384693082","https://openalex.org/W2245592118"],"abstract_inverted_index":{"BacillOndex":[0,79,130],"is":[1,102,131],"an":[2],"extension":[3],"of":[4,33,76,85,91,105],"the":[5,18,40,74,83,86,89,103,106,136],"Ondex":[6],"data":[7,36,46,55],"integration":[8],"system,":[9],"providing":[10],"a":[11,27,31,68,78,132],"semantically":[12],"annotated,":[13],"integrated":[14,42],"knowledge":[15],"base":[16],"for":[17,88,124,135],"model":[19],"Gram-positive":[20],"bacterium":[21],"Bacillus":[22],"subtilis.":[23],"This":[24],"application":[25],"allows":[26],"user":[28],"to":[29,151,154],"mine":[30],"variety":[32],"B.":[34,96,110],"subtilis":[35,97,111],"sources,":[37],"and":[38,51,81,140],"analyse":[39],"resulting":[41],"dataset,":[43],"which":[44],"contains":[45],"about":[47],"genes,":[48],"gene":[49],"products":[50],"their":[52],"interactions.":[53],"The":[54,99],"can":[56],"be":[57],"analysed":[58],"either":[59],"manually,":[60],"by":[61],"browsing":[62],"using":[63],"Ondex,":[64],"or":[65],"computationally":[66],"via":[67],"Web":[69],"services":[70],"interface.":[71],"We":[72,113,127],"describe":[73,82],"process":[75],"creating":[77],"instance,":[80],"use":[84],"system":[87],"analysis":[90],"single":[92],"nucleotide":[93],"polymorphisms":[94],"in":[95,159],"Marburg.":[98],"Marburg":[100],"strain":[101,109],"progenitor":[104],"widely-used":[107],"laboratory":[108],"168.":[112],"identified":[114],"27":[115],"SNPs":[116],"with":[117],"predictable":[118],"phenotypic":[119],"effects,":[120],"including":[121],"genetic":[122,157],"traits":[123],"known":[125],"phenotypes.":[126],"conclude":[128],"that":[129],"valuable":[133],"tool":[134],"systems-level":[137],"investigation":[138],"of,":[139],"hypothesis":[141],"generation":[142],"about,":[143],"this":[144,160],"important":[145],"biotechnology":[146],"workhorse.":[147],"Such":[148],"understanding":[149],"contributes":[150],"our":[152],"ability":[153],"construct":[155],"synthetic":[156],"circuits":[158],"organism.":[161]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
